PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82428.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1138aa MW: 124320 Da PI: 4.1774

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.1	6e-10	375	450	2	70
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ ++ aLi+a+r+ + +l+++ ++ +W +v +++ + g+ r +C +kw+nl +++kk+ + ++ GBG82428.1 375 WSVEHMVALIRAKRYQNAQLQASGhnfarmrTREWKWMDVRDRLLKVGVDRPEDKCGKKWDNLMQQFKKVHAFMGM 450 99**********9999999763334444499**********************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1138 aa Download sequence
MADVFRKLPL LLLVVILLVV VVFVHVCILG RLPSRTRRKG GARKSVAMDV RRPTQRTLSD 60 PYPTDRAPIC AGADRRAAGP SPYEGLPPHL QPLPNSDEGE AEVDVSTTVP LGSGSTQEWT 120 GSQLYDRRRT KYGQSFTSLL HDDAEEEDCL PPVDLTFCLR SGSPFSVTRT VLVNPHPDDD 180 AGQVTFGGRG TRGVAAAEVT SGKTTAWPRT QVTSRLSVPR TVGQRPEWMT LSPPLSGGCN 240 DVRRPVDRAV THEDFPSEGA YGDGRRVWKD ARQELRRQQE ESITKGVERL RVGERSGQAD 300 VAAGGGEAWA NADEVQCDVD DDDSGDVFPL RVPNIGGRGG RGSTSTRAVR RRTRSTTASA 360 DAEGEGDGEG GRNFWSVEHM VALIRAKRYQ NAQLQASGHN FARMRTREWK WMDVRDRLLK 420 VGVDRPEDKC GKKWDNLMQQ FKKVHAFMGM SRKEDFFQLT SQQRAEKGFN FNMDQAIFEE 480 IKGARERSHT ISPTNVADTG GAGGIAAGCA ALTSLLHQLS AIDVIRLHSD DGKRGRESNQ 540 GEAATAVKRG RHQAKKAKAS GGGALVIGRA AREEWITEGS NDEDDDFESE ADTFHGVKGS 600 SREQTAARKI SGDEGGKGGI KGEGMNVARG DNDAGGDVAA AGGGRDDRGR QLTPTTRNPV 660 QARDVPAAHD IGRQQPLRAS STQAMPAAGQ ARREEGAAVT AATRPQPPVC SGAKDVVAAG 720 AITGTSTGGA GGGGGDGCDG DDNDDPLINR QRRTEGMAAL ETKARLWVDD HRFWNETEGH 780 GLVKMIQETR LHLLAIAKGV KPPEIRKSIV LPNSTIPLQK MEDESELQAA KERAGRVQTI 840 ALRIIHGWLF ESPNRARSYH CAYDYVLNHV ATDLGRAIWL GEDWRVCVSP VVVHNTLEAR 900 MKLPIWYVGG IIHDRHEDDE MASYQESTTQ RLVGAFTNAV DVGEGVDGGD WIGWAPDHPK 960 STTKRRRRQT RGRRERWSRT ACGDDGDADD GDDDGDDDDD GDDDDEGGDD QTNDADDQDG 1020 ADDDDDDVDD DDDDDDDDDG DDDEDDDDDD DDDDDKDDAD DDDDDDDDDD VDDDDDDDDD 1080 DDNDDDDDDD DDDDDDDDDN DDDNDDDDDD DADDDDDDDD DDDDDDDDDD EDDDINLR

Sequence ? help Back to Top

Protein Sequence Length: 1138 aa Download sequence

MADVFRKLPL LLLVVILLVV VVFVHVCILG RLPSRTRRKG GARKSVAMDV RRPTQRTLSD  60
PYPTDRAPIC AGADRRAAGP SPYEGLPPHL QPLPNSDEGE AEVDVSTTVP LGSGSTQEWT  120
GSQLYDRRRT KYGQSFTSLL HDDAEEEDCL PPVDLTFCLR SGSPFSVTRT VLVNPHPDDD  180
AGQVTFGGRG TRGVAAAEVT SGKTTAWPRT QVTSRLSVPR TVGQRPEWMT LSPPLSGGCN  240
DVRRPVDRAV THEDFPSEGA YGDGRRVWKD ARQELRRQQE ESITKGVERL RVGERSGQAD  300
VAAGGGEAWA NADEVQCDVD DDDSGDVFPL RVPNIGGRGG RGSTSTRAVR RRTRSTTASA  360
DAEGEGDGEG GRNFWSVEHM VALIRAKRYQ NAQLQASGHN FARMRTREWK WMDVRDRLLK  420
VGVDRPEDKC GKKWDNLMQQ FKKVHAFMGM SRKEDFFQLT SQQRAEKGFN FNMDQAIFEE  480
IKGARERSHT ISPTNVADTG GAGGIAAGCA ALTSLLHQLS AIDVIRLHSD DGKRGRESNQ  540
GEAATAVKRG RHQAKKAKAS GGGALVIGRA AREEWITEGS NDEDDDFESE ADTFHGVKGS  600
SREQTAARKI SGDEGGKGGI KGEGMNVARG DNDAGGDVAA AGGGRDDRGR QLTPTTRNPV  660
QARDVPAAHD IGRQQPLRAS STQAMPAAGQ ARREEGAAVT AATRPQPPVC SGAKDVVAAG  720
AITGTSTGGA GGGGGDGCDG DDNDDPLINR QRRTEGMAAL ETKARLWVDD HRFWNETEGH  780
GLVKMIQETR LHLLAIAKGV KPPEIRKSIV LPNSTIPLQK MEDESELQAA KERAGRVQTI  840
ALRIIHGWLF ESPNRARSYH CAYDYVLNHV ATDLGRAIWL GEDWRVCVSP VVVHNTLEAR  900
MKLPIWYVGG IIHDRHEDDE MASYQESTTQ RLVGAFTNAV DVGEGVDGGD WIGWAPDHPK  960
STTKRRRRQT RGRRERWSRT ACGDDGDADD GDDDGDDDDD GDDDDEGGDD QTNDADDQDG  1020
ADDDDDDVDD DDDDDDDDDG DDDEDDDDDD DDDDDKDDAD DDDDDDDDDD VDDDDDDDDD  1080
DDNDDDDDDD DDDDDDDDDN DDDNDDDDDD DADDDDDDDD DDDDDDDDDD EDDDINLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-07	Trihelix family protein