PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82177.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 704aa MW: 77437.2 Da PI: 6.6251

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.7	4e-15	180	254	2	74
trihelix 2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 W+++ +laL++a+++ ++l + +++ k +W+++s+km++ g r + Ck++w+nl ry+ki +++k+ ++ GBG82177.1 180 WSHDATLALVRAKQDESNELHDpsvpTQRLKSKWAAISEKMASWGEVRDASACKKRWNNLIVRYRKIVDHQKQ--PG 254 *******************844435688**************************************997..33 PP
2	trihelix	51.2	3.3e-16	427	507	2	82
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 W+++ ++aL++a+re +l++++ + + +W ++++km++ g+ r ++ Ck++w+nl ry+ki +++k+ + p f GBG82177.1 427 WSHDATMALVRAKREEAGELQDASraqplkSSAEKWGAIAAKMAAWGVVRDATVCKKRWNNLIARYRKIVDHQKRAD--Q----PSF 507 ************999999987444454499***************************************9852..2....334 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MFSRHRAEDL LAFHSECFRC CNPGKIRIRT RRVRVEEERR KRNGAFRKPF CGMEDAADFP 60 GRGGTMAAEE IRICMQRTHP SPQALVEDNA VAETRGAARP AAGAKKKAAG DAEAPVTGKP 120 VILALPPPVA EAAAATATDA AVANTPARPG ANDAEHVERA TVVADQRDRK RSPFTRSSNW 180 SHDATLALVR AKQDESNELH DPSVPTQRLK SKWAAISEKM ASWGEVRDAS ACKKRWNNLI 240 VRYRKIVDHQ KQPGQPSFWE LTPEQRKGVG ILGHVERDVF DAMDALLVGK QNSNHANNND 300 NIKPSCLFPS NGLPQLPAPP SDTNGLEQQH EEEVQEQDKE PQQEQQDEQQ EEQQQQEEDQ 360 KEDTPAQQLL LLEAPPMQAL PEHRRQPQPG ESSSTIGSGG DPPEQLPLAG LERRDRVRLP 420 FVRSSNWSHD ATMALVRAKR EEAGELQDAS RAQPLKSSAE KWGAIAAKMA AWGVVRDATV 480 CKKRWNNLIA RYRKIVDHQK RADQPSFWDL TAEQRKSVGA LGHLDRDVFE ALDSFIGPKE 540 NGNANHAANR NGMVVEESRL QHPLEGTPQA VDSDATRSSD EEDEDATRPT TPGSTSKRSA 600 EPTSSDRSKR RQTVPGAIVD LTGAIREGGE AFATAYAGAA DRQAALLDKQ AELLRETGRE 660 QSDVMREMNQ VLDNGNRMLV GALAGIAEAL NAVARSIGSG KNMQ

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MFSRHRAEDL LAFHSECFRC CNPGKIRIRT RRVRVEEERR KRNGAFRKPF CGMEDAADFP  60
GRGGTMAAEE IRICMQRTHP SPQALVEDNA VAETRGAARP AAGAKKKAAG DAEAPVTGKP  120
VILALPPPVA EAAAATATDA AVANTPARPG ANDAEHVERA TVVADQRDRK RSPFTRSSNW  180
SHDATLALVR AKQDESNELH DPSVPTQRLK SKWAAISEKM ASWGEVRDAS ACKKRWNNLI  240
VRYRKIVDHQ KQPGQPSFWE LTPEQRKGVG ILGHVERDVF DAMDALLVGK QNSNHANNND  300
NIKPSCLFPS NGLPQLPAPP SDTNGLEQQH EEEVQEQDKE PQQEQQDEQQ EEQQQQEEDQ  360
KEDTPAQQLL LLEAPPMQAL PEHRRQPQPG ESSSTIGSGG DPPEQLPLAG LERRDRVRLP  420
FVRSSNWSHD ATMALVRAKR EEAGELQDAS RAQPLKSSAE KWGAIAAKMA AWGVVRDATV  480
CKKRWNNLIA RYRKIVDHQK RADQPSFWDL TAEQRKSVGA LGHLDRDVFE ALDSFIGPKE  540
NGNANHAANR NGMVVEESRL QHPLEGTPQA VDSDATRSSD EEDEDATRPT TPGSTSKRSA  600
EPTSSDRSKR RQTVPGAIVD LTGAIREGGE AFATAYAGAA DRQAALLDKQ AELLRETGRE  660
QSDVMREMNQ VLDNGNRMLV GALAGIAEAL NAVARSIGSG KNMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	4e-09	Trihelix family protein