PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG80749.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | Trihelix | ||||||||
Protein Properties | Length: 261aa MW: 29599.8 Da PI: 9.2375 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38 | 4.2e-12 | 6 | 57 | 19 | 70 |
trihelix 19 erlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 e ++r++lk++ W+ v ++m e+g++r +qCk+k++++ +y+++k++ek GBG80749.1 6 EVYGRARLKAGFWKIVEQRMXEKGYNRRDEQCKNKFNQIMEYYRRLKAHEKW 57 5678999*****************************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGEDTEVYGR ARLKAGFWKI VEQRMXEKGY NRRDEQCKNK FNQIMEYYRR LKAHEKWSGR 60 QSYXDMNKAQ RKRYNVXFVL KRSWYDIIDP XEKDKDSIDL XNLMDSXADE EXLEDEDDAA 120 DHGXGAGGAS GDXPAGXGGS TSGSQGAGIE PTLGKRKRGY VSARESSVQS VTIAMRAHTV 180 ALXRSDKECX VMXIEAXRAI XTQQVEARRE LVLQEIASRX RIADRMGERV ERGYSALADA 240 IRSLRSRRGX SRESPSSSDS R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 3e-06 | Trihelix family protein |