PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG79953.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1988aa MW: 196867 Da PI: 7.088

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG79953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	44.7	2.2e-14	1791	1817	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yktelCr + +tGtC+yG++C+FaHg+ GBG79953.1 1791 YKTELCRSWEETGTCRYGGKCQFAHGK 1817 9************************96 PP
2	zf-CCCH	36.1	1.1e-11	1829	1853	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte+Cr+f+ +GtC+yG rC+F+H GBG79953.1 1829 YKTEICRTFSSNGTCPYGTRCRFIH 1853 9************************ PP

Sequence ? help Back to Top
Protein Sequence Length: 1988 aa Download sequence
MAGGSLDKIL TAGLDKMSSS LDKMPKGNGG KQADGGNARK EEAENVPAEE STCKRGEEKK 60 STNGGGGDPA SIGEGANASP SSTRTFPPSN EGPAMKSSSL GERMSQKLTK QLSVIVRGEG 120 GGAMDWFHSL KQPFLPRASE KLQMESGNQE LQVESGKQEE ELQTESARNE DELQTESRNG 180 EEELQTESRN EQSKDRKKYL IGSYNPEDVE LVLQPFPWGK GEEKDCLGEE LEAEPSVGQS 240 VGQSVGITMV NVFDSADLSV LPEANEEGSG EEGMCLADDE LNKMVDCLTS DVNNTNGSEI 300 NSGNVSFGNI ENFKEKDGGN VGVGNTEKEK NGGNVGVGNT EKAENGGNVG GGNVGGGNIE 360 KEVNGTRKTG DKTNEKEING INSSSGNGVV ILRDGLGIAA GTAEVTEERA SALVLVGSGS 420 VAATSTSTSL VSVLPGSAAA VAAASAGTSM VSAGSGSVAA AAAAAAPTAA SASASVLKGA 480 TVRPHHVAQR RRDEKGPEAG ACVGGRGGGG GGENITAAAG STFSATEVCT SAKNSTRGSS 540 SSTSSNSAIT TLLYPCDRQH RVLYPPACGF NPIRINCGKR ITPAQDKSVS QDKESSSFWV 600 SSSTIKALSS PANGAAAGGK GGGSYHALPS RQNSTAVPPV STPIPGSHPH SSPSSSSSSA 660 FTASTASSIS HPHSSPSSSS SSAFTASTAS SISLDSKDKS DMDGLQGGTS SSSREERLGV 720 ENRKQLAVAG SQRGERTGVE DGAVTGGVAD MTRSSQGGIL KQHQLGEGEV KRRAFPSPPS 780 ILTPSPPPPP QPLLGQRFEP KRGQKGGGPG LLGGGRGNNA PGGSRMMGAA AAAAGLTSTP 840 GPLSPCPARG YAAAVGRSLV RPPPYQGKDK FDEVSPSYPG RNKQSNYDLN EVTVENRAER 900 VGVRRSEEGC ASAAGAGDDA LGNETGLPLL VEEMVQDLWE ENEDPSVPIR TGEAAASRDE 960 DDPTVVAAAS LDTKRSAGGG VGITRRVSAV GSGGGMKRIG GEGGIRDGGG GGGGGTRQAL 1020 GVRTPAVSFA AAAEGQRSLR RDEPGSLSPP SVTTHQSHIP LPLGYRRGLP GMIAEEEGAV 1080 ATPAGGGGGG GGDSASSIAE GVLAMAGRPG GHVPFQQIRQ AGPRGVSAGG GGGLGSLGAA 1140 AGGVAAGGAA GGGGGGGGGY NVGTSRATGL SAAASQSLTV VPHRHSPTFR QAGGPGSGSG 1200 YPVGSGLHAS PYLSPSLQAS LTPILGGGGM GMAAMAAQFG RRPSSPTNTV EVAEAAAAGP 1260 AMGGRAGGAS TGTVMTGPAA VSPRADSGPG TAAGASMAKT GLSLDTVGGA ADGSCGTGPT 1320 VPAGAATGSG IGSIAPVMLM PQGIICQSPL MRGQAGHHAH ASRMKPGGVV GGGGGGGGGG 1380 GSGGLFPALS PSPSPLGIFG GSGGAMGGVG GGGGGGDGSL LDLQEMQQEL LYGAAGFGPI 1440 RGAPSPTGIT AEQYGKFQHQ LQQQHHMAAA QSQHQLLQAA AAAAAAAAAG GGGGGGAGFI 1500 PQAPPSPSSY QLFLQQQQQQ QQQQQVDRRS AMKLTMAGPG GPVAIGRGSN SGPGTAFQPG 1560 TGNSGPGVAG PAGHLGIINT SGNAAGFNGS MSSPLGGGGG GGGGVIGGGR MGPQSRGPHN 1620 ALTLAGGGNG ISMANPLGGG VSAAGSRSPH RTNGGPGSGS GPSGGSTVIS GPRSMMLRLP 1680 VLQIPGAYDR HAVSGQESTS RELTTPSGIG TGDGTPSAPG LMHVGSCRIL PMQQLSACSA 1740 GVGMGGGAGG GGVPGVVISP PLSPSDAGAV ASSGALTATT PTTPQSPHSL YKTELCRSWE 1800 ETGTCRYGGK CQFAHGKEEL RPVARHPKYK TEICRTFSSN GTCPYGTRCR FIHYRTALQP 1860 DPPSPVSSPC ARPASCAAGA AKLIASSPLK EDDGNMRRLP IFQRLAPGSS ESPQFEMTGL 1920 ASGDHLGQTR FDQQIRATKP GSVDWSARGP APVGGSPVGG SGNVVSFLRV SAVSEEPLLV 1980 TWDLEGAM

Sequence ? help Back to Top

Protein Sequence Length: 1988 aa Download sequence

MAGGSLDKIL TAGLDKMSSS LDKMPKGNGG KQADGGNARK EEAENVPAEE STCKRGEEKK  60
STNGGGGDPA SIGEGANASP SSTRTFPPSN EGPAMKSSSL GERMSQKLTK QLSVIVRGEG  120
GGAMDWFHSL KQPFLPRASE KLQMESGNQE LQVESGKQEE ELQTESARNE DELQTESRNG  180
EEELQTESRN EQSKDRKKYL IGSYNPEDVE LVLQPFPWGK GEEKDCLGEE LEAEPSVGQS  240
VGQSVGITMV NVFDSADLSV LPEANEEGSG EEGMCLADDE LNKMVDCLTS DVNNTNGSEI  300
NSGNVSFGNI ENFKEKDGGN VGVGNTEKEK NGGNVGVGNT EKAENGGNVG GGNVGGGNIE  360
KEVNGTRKTG DKTNEKEING INSSSGNGVV ILRDGLGIAA GTAEVTEERA SALVLVGSGS  420
VAATSTSTSL VSVLPGSAAA VAAASAGTSM VSAGSGSVAA AAAAAAPTAA SASASVLKGA  480
TVRPHHVAQR RRDEKGPEAG ACVGGRGGGG GGENITAAAG STFSATEVCT SAKNSTRGSS  540
SSTSSNSAIT TLLYPCDRQH RVLYPPACGF NPIRINCGKR ITPAQDKSVS QDKESSSFWV  600
SSSTIKALSS PANGAAAGGK GGGSYHALPS RQNSTAVPPV STPIPGSHPH SSPSSSSSSA  660
FTASTASSIS HPHSSPSSSS SSAFTASTAS SISLDSKDKS DMDGLQGGTS SSSREERLGV  720
ENRKQLAVAG SQRGERTGVE DGAVTGGVAD MTRSSQGGIL KQHQLGEGEV KRRAFPSPPS  780
ILTPSPPPPP QPLLGQRFEP KRGQKGGGPG LLGGGRGNNA PGGSRMMGAA AAAAGLTSTP  840
GPLSPCPARG YAAAVGRSLV RPPPYQGKDK FDEVSPSYPG RNKQSNYDLN EVTVENRAER  900
VGVRRSEEGC ASAAGAGDDA LGNETGLPLL VEEMVQDLWE ENEDPSVPIR TGEAAASRDE  960
DDPTVVAAAS LDTKRSAGGG VGITRRVSAV GSGGGMKRIG GEGGIRDGGG GGGGGTRQAL  1020
GVRTPAVSFA AAAEGQRSLR RDEPGSLSPP SVTTHQSHIP LPLGYRRGLP GMIAEEEGAV  1080
ATPAGGGGGG GGDSASSIAE GVLAMAGRPG GHVPFQQIRQ AGPRGVSAGG GGGLGSLGAA  1140
AGGVAAGGAA GGGGGGGGGY NVGTSRATGL SAAASQSLTV VPHRHSPTFR QAGGPGSGSG  1200
YPVGSGLHAS PYLSPSLQAS LTPILGGGGM GMAAMAAQFG RRPSSPTNTV EVAEAAAAGP  1260
AMGGRAGGAS TGTVMTGPAA VSPRADSGPG TAAGASMAKT GLSLDTVGGA ADGSCGTGPT  1320
VPAGAATGSG IGSIAPVMLM PQGIICQSPL MRGQAGHHAH ASRMKPGGVV GGGGGGGGGG  1380
GSGGLFPALS PSPSPLGIFG GSGGAMGGVG GGGGGGDGSL LDLQEMQQEL LYGAAGFGPI  1440
RGAPSPTGIT AEQYGKFQHQ LQQQHHMAAA QSQHQLLQAA AAAAAAAAAG GGGGGGAGFI  1500
PQAPPSPSSY QLFLQQQQQQ QQQQQVDRRS AMKLTMAGPG GPVAIGRGSN SGPGTAFQPG  1560
TGNSGPGVAG PAGHLGIINT SGNAAGFNGS MSSPLGGGGG GGGGVIGGGR MGPQSRGPHN  1620
ALTLAGGGNG ISMANPLGGG VSAAGSRSPH RTNGGPGSGS GPSGGSTVIS GPRSMMLRLP  1680
VLQIPGAYDR HAVSGQESTS RELTTPSGIG TGDGTPSAPG LMHVGSCRIL PMQQLSACSA  1740
GVGMGGGAGG GGVPGVVISP PLSPSDAGAV ASSGALTATT PTTPQSPHSL YKTELCRSWE  1800
ETGTCRYGGK CQFAHGKEEL RPVARHPKYK TEICRTFSSN GTCPYGTRCR FIHYRTALQP  1860
DPPSPVSSPC ARPASCAAGA AKLIASSPLK EDDGNMRRLP IFQRLAPGSS ESPQFEMTGL  1920
ASGDHLGQTR FDQQIRATKP GSVDWSARGP APVGGSPVGG SGNVVSFLRV SAVSEEPLLV  1980
TWDLEGAM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	504	512	GGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-25	C3H family protein