PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG79952.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family C3H
Protein Properties Length: 378aa    MW: 42474.5 Da    PI: 4.976
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG79952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06103126226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff+r G+C  G +CkF+H+
  GBG79952.1 103 KSILCEFFRR-GQCTKGFKCKFSHD 126
                 6779**9999.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MPPKGAPAKG AGKEKKADIA KKQKLVEDKT FGLKNKNKSS KVQKYVQSVA QAASAPRKRT  60
EAEDHKTAQR KKKEEEAARE KELNELFKVA ISQPKVPVGV DPKSILCEFF RRGQCTKGFK  120
CKFSHDLNVE RKGEKIDLYS DQRDVPQEES MEDWDQEKLE DVVATKGQEY ANQNKGTTIV  180
CKYFLEAVEK KQYGWFWVCP NGGKDCQYRH ALPPGYVLKS QMKALLEEEG DKLPVEDEIE  240
TARHKLPAST PLTGELFAEW KRKKKEKKDA ENAEKQAERA KADRMSGREL FLSDATLFVD  300
DAEACDEYER EEEQATPAEP SSAARASEGG ANERPNAGEK LEITDEDAAL LAEDDDDLSP  360
EELAELERGI AQTSLQDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15773RKRTEAEDHKTAQRKKK
2262267RKKKEK
3262269RKKKEKKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-116C3H family protein