PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GBG79507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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Family | Trihelix | ||||||||
Protein Properties | Length: 506aa MW: 54929.2 Da PI: 6.3406 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.1 | 1.1e-13 | 346 | 417 | 2 | 66 |
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ + GBG79507.1 346 WSVEHIIALIRAKRDQDAHVQgmghayaRMKPREWKWQDVAQRLKNVGVYRNAEKCGKKWDNLMQQFKKVHH 417 9*************666666633333326799*************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence |
MPPRRRKTRS SMKDARMEAR QAIPQFGGEQ VGGRRCGGSL STVGRASQRV GCDAFPPHLQ 60 PLPGSSDEEE EVERWPQTVS LGCGSMQEWS ATELCGTGGD VYEQSFTQLL RPGLGEDEGD 120 GRVNLSFGLS TGRSTTPSHT VLVRPHPGDE GGQLTAVDRS ARTRALASEM AGANRNSSTA 180 QPRAASLSKG AQGRPEWMQL PSPLSAASEV ARGRGVGVDG GTDFLDVGDG RDGREVWRDL 240 RRDHRLRREE YITRGVERLH VGDWENENET DDPRAEADDD DDEDNDVECG KGGGGHASPS 300 LQTGMAGKGG KSKPSGRNAR SRAKKGQGKG SGGEGDGDAE EKRNFWSVEH IIALIRAKRD 360 QDAHVQGMGH AYARMKPREW KWQDVAQRLK NVGVYRNAEK CGKKWDNLMQ QFKKVHHFQS 420 PSGGADFFQL TSKERASRGF NFTMDRSVYD EIEGSTGMNH TIHLRNVADT GAPGGVRPPS 480 TSYVDPDSVA DGEGGAGRED DEEGSM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 7 | PRRRK |
2 | 319 | 327 | ARSRAKKGQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 5e-11 | Trihelix family protein |