PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG79234.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 862aa MW: 94637.1 Da PI: 6.7591

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG79234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.1	2e-12	326	401	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + + aLi+a+r+ + +l+ r k + +W +v+ ++++ g+ r++ +C +kw+nl +++kk+ + ++ GBG79234.1 326 WSVDDIIALIQAKRYQDAHLQgmghayaRMKPLEWKWLDVATRLKKVGVDREADRCGKKWDNLMQQFKKVHHFQGL 401 99**********777777743332225577788999*****************************9887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MEGRQAISGS AGERGGRWSE HNPSNSLRPS EQFGYAHLPP HLQPLPDTDD EEGDDRRSRT 60 VPLGSGSTQE WAATELFGSR DGGKGQSYTE LLQQGLSNID GDGGVNLSFG LGSGRSAAVS 120 RTVVVSPHPD DDGGDVTAVQ RSPRSPAPLR EASGNNKDPP RQQFRSSSVC RGASARPQWM 180 QSPSPLSATS SAGRRVGECR ETAPAVADVG DARDGRELWP EQRLLMRSGR EESITRGVHR 240 LRVGEDGHDG EDAVGDAHDP DWNDNDAEGG EDDAGYISPS KQAAAMGGKG GKTKSCGGNG 300 RRGKRTAGKG SDAEGDVDGE GGRHFWSVDD IIALIQAKRY QDAHLQGMGH AYARMKPLEW 360 KWLDVATRLK KVGVDREADR CGKKWDNLMQ QFKKVHHFQG LSGKQDFFQL SGKDKMSKGF 420 SFNMDLVFGD ILLGEHVFSP VVFTAIVAFP KVVAFVVQIV IVTAGASCAM SSRGSARGKA 480 AANLTQQPPT REKKGRHMAS KKRKILEGAP AHGGYVLDEE WVPEDVATQE GTDFEDSDDM 540 PLQRKSSKRG SDVAGEGDDD EALVNRLRQR NTREGMEAAT KLWVDDLRFW NEREGFAIVK 600 LIAEARGYLV AVARGEQPPP IRRSIVLPHN SIPQHKIADE SELNAAKERA VKVQGIALRV 660 IHGWVFKSQN RQRGYHAAYQ YALNHAAIDI ARAMWMGEDW RYCVSPMVVH HTLDMDMKLP 720 LWFVGADVED RHEDDGLAAY QEVSIQRLVG AFTSAVIIVE AMDGDRVSHE RLKTMADAMQ 780 MMRAATMWLM RMAGDDHRAH YDTWVFVQLT AKPTLVASMH RCFDARRHIV QAATVITDKL 840 ASPPITLIDP PIYVPDWASI GV

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MEGRQAISGS AGERGGRWSE HNPSNSLRPS EQFGYAHLPP HLQPLPDTDD EEGDDRRSRT  60
VPLGSGSTQE WAATELFGSR DGGKGQSYTE LLQQGLSNID GDGGVNLSFG LGSGRSAAVS  120
RTVVVSPHPD DDGGDVTAVQ RSPRSPAPLR EASGNNKDPP RQQFRSSSVC RGASARPQWM  180
QSPSPLSATS SAGRRVGECR ETAPAVADVG DARDGRELWP EQRLLMRSGR EESITRGVHR  240
LRVGEDGHDG EDAVGDAHDP DWNDNDAEGG EDDAGYISPS KQAAAMGGKG GKTKSCGGNG  300
RRGKRTAGKG SDAEGDVDGE GGRHFWSVDD IIALIQAKRY QDAHLQGMGH AYARMKPLEW  360
KWLDVATRLK KVGVDREADR CGKKWDNLMQ QFKKVHHFQG LSGKQDFFQL SGKDKMSKGF  420
SFNMDLVFGD ILLGEHVFSP VVFTAIVAFP KVVAFVVQIV IVTAGASCAM SSRGSARGKA  480
AANLTQQPPT REKKGRHMAS KKRKILEGAP AHGGYVLDEE WVPEDVATQE GTDFEDSDDM  540
PLQRKSSKRG SDVAGEGDDD EALVNRLRQR NTREGMEAAT KLWVDDLRFW NEREGFAIVK  600
LIAEARGYLV AVARGEQPPP IRRSIVLPHN SIPQHKIADE SELNAAKERA VKVQGIALRV  660
IHGWVFKSQN RQRGYHAAYQ YALNHAAIDI ARAMWMGEDW RYCVSPMVVH HTLDMDMKLP  720
LWFVGADVED RHEDDGLAAY QEVSIQRLVG AFTSAVIIVE AMDGDRVSHE RLKTMADAMQ  780
MMRAATMWLM RMAGDDHRAH YDTWVFVQLT AKPTLVASMH RCFDARRHIV QAATVITDKL  840
ASPPITLIDP PIYVPDWASI GV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-08	Trihelix family protein