PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG78595.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 585aa MW: 63486.4 Da PI: 5.7959

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG78595.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.2	1.4e-15	306	389	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW ++e+ +L ++r+e+++ ++++ k + W+ v+++m+e g++rsp+qCk+k+++++ y+++k +e+ + p + GBG78595.1 306 RWGEEETAVLCRIRNEVKQLMGEETdaygrdrIKSGFWKMVAQRMKENGVNRSPEQCKNKFNQVHDFYRRLKGHERWS------SLPSYW 389 8************9999988643333333399************************************999862......344444 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MPAEGDHEGL SCIQDWGCSE SQVPPAQGHG TFTVQAVDQQ VQWSHDAYGT RAHFSQSSAS 60 QTFAAPVGGT GPHVGLSPVP HEAVGHCPPV AGTSAHHRSY GPSGDPFSSP LQPVGGFRFG 120 VGGEDEYALR EQLRRRAMAM AGASESDLQH SPACFSRELF SGQHRNSDSL PPDGQPVTPI 180 SPQAPTPQTR CHSSGGGDGG QRQQGGEDYI INRLIRNVEA GDLSSQDCGA GDGHRVGQPS 240 LSPFVGASPS EGDNLGASGG SPNVPAGVNA PQPIPSPPVS SCWMSTAARH ETSAGRPSPA 300 DKSSDRWGEE ETAVLCRIRN EVKQLMGEET DAYGRDRIKS GFWKMVAQRM KENGVNRSPE 360 QCKNKFNQVH DFYRRLKGHE RWSSLPSYWD MNASTRKVYN VDFIIRRSWY DAINSAEKDT 420 DSITLSDLRD LGTEHERREE EEGAGEEDGQ AELPTDEDGP GAAGGPSVNE GTRSTAFDPM 480 LGKRKRAVMN ARESSMRAIT GAMRDHTVAL ARSDRDCARI RYDATRDVAA QQAELQQDIA 540 SRERTVKEYG DRVENAYMAM ADAIRSLRAP HNNPRDHRRS SDDSE

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MPAEGDHEGL SCIQDWGCSE SQVPPAQGHG TFTVQAVDQQ VQWSHDAYGT RAHFSQSSAS  60
QTFAAPVGGT GPHVGLSPVP HEAVGHCPPV AGTSAHHRSY GPSGDPFSSP LQPVGGFRFG  120
VGGEDEYALR EQLRRRAMAM AGASESDLQH SPACFSRELF SGQHRNSDSL PPDGQPVTPI  180
SPQAPTPQTR CHSSGGGDGG QRQQGGEDYI INRLIRNVEA GDLSSQDCGA GDGHRVGQPS  240
LSPFVGASPS EGDNLGASGG SPNVPAGVNA PQPIPSPPVS SCWMSTAARH ETSAGRPSPA  300
DKSSDRWGEE ETAVLCRIRN EVKQLMGEET DAYGRDRIKS GFWKMVAQRM KENGVNRSPE  360
QCKNKFNQVH DFYRRLKGHE RWSSLPSYWD MNASTRKVYN VDFIIRRSWY DAINSAEKDT  420
DSITLSDLRD LGTEHERREE EEGAGEEDGQ AELPTDEDGP GAAGGPSVNE GTRSTAFDPM  480
LGKRKRAVMN ARESSMRAIT GAMRDHTVAL ARSDRDCARI RYDATRDVAA QQAELQQDIA  540
SRERTVKEYG DRVENAYMAM ADAIRSLRAP HNNPRDHRRS SDDSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	2e-08	Trihelix family protein