PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG78473.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 767aa MW: 80429.6 Da PI: 5.3154

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG78473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	565	587	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F+++ L H++ H GBG78473.1 565 YSCGYCTRRFTSSQALGGHQNAH 587 99******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MVGELQRGAY RLQDMLGDNE DEVSLTEDAE GEQDDDCDVL HYYTNIGAMC EILESETETS 60 CAVVVRECDE YERGGEERWV NLMALSYQVE VESAVGGGER EYAADDAAEW EVRDESAVGD 120 GEGEYATDDE GEWEGEWGLL ATVEMVAEAA VTATATTTTL TTTIMEVEQG SAVERQGMGG 180 IGEKGGLVDN NNDNNNNSNF NNGSERRMGE LGQEREQRCP CGKKQQGVCD RNQLEGRKLQ 240 SICQCRSSER LVESGWPSQR IAVGVEIEII CNVRGGPGGG CLGQGLLQPC RGSPEVTVQP 300 GGLSGSGSLL EERKGGLDLN RRSSPAAGSP RGSPGRGGSC PQERPFIDYL GGSGNCDAGR 360 KNDHWRRDSL TGTTSVSVST ERQMATSVKI FGVEVGAHGT QHAVGCFSQG SVEAFPLDRG 420 RQQSHVLGTG GGGGGGGGAG GAGGAAGGGA GSYQRRMDDV DSELSLGSHG RIIQNHTSSC 480 PVGSCIPSLG PAQTRAARST LPGPAHLSPG GEKTADGSHN EESSSSISPN HGVSLSQDTG 540 IQRPGESEWM ATSSASGGAV EPRSYSCGYC TRRFTSSQAL GGHQNAHKRQ RAQLRRQNLQ 600 RQGGCSSSFR DAGPASRAST VGDYGHMNQP PLPCHNSALY GGAMRSSSVI GGVHPVAAAA 660 AAAAAAAAHV NPPRMQYPYY NHHTLGGANA TPGSRLPGPP PNPPQSATAA WTHQYSYSYP 720 SSHSIQQQLD NGTQHRASDG HHPMHAMPAG RGLSGRGDVG NRPHSWN

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MVGELQRGAY RLQDMLGDNE DEVSLTEDAE GEQDDDCDVL HYYTNIGAMC EILESETETS  60
CAVVVRECDE YERGGEERWV NLMALSYQVE VESAVGGGER EYAADDAAEW EVRDESAVGD  120
GEGEYATDDE GEWEGEWGLL ATVEMVAEAA VTATATTTTL TTTIMEVEQG SAVERQGMGG  180
IGEKGGLVDN NNDNNNNSNF NNGSERRMGE LGQEREQRCP CGKKQQGVCD RNQLEGRKLQ  240
SICQCRSSER LVESGWPSQR IAVGVEIEII CNVRGGPGGG CLGQGLLQPC RGSPEVTVQP  300
GGLSGSGSLL EERKGGLDLN RRSSPAAGSP RGSPGRGGSC PQERPFIDYL GGSGNCDAGR  360
KNDHWRRDSL TGTTSVSVST ERQMATSVKI FGVEVGAHGT QHAVGCFSQG SVEAFPLDRG  420
RQQSHVLGTG GGGGGGGGAG GAGGAAGGGA GSYQRRMDDV DSELSLGSHG RIIQNHTSSC  480
PVGSCIPSLG PAQTRAARST LPGPAHLSPG GEKTADGSHN EESSSSISPN HGVSLSQDTG  540
IQRPGESEWM ATSSASGGAV EPRSYSCGYC TRRFTSSQAL GGHQNAHKRQ RAQLRRQNLQ  600
RQGGCSSSFR DAGPASRAST VGDYGHMNQP PLPCHNSALY GGAMRSSSVI GGVHPVAAAA  660
AAAAAAAAHV NPPRMQYPYY NHHTLGGANA TPGSRLPGPP PNPPQSATAA WTHQYSYSYP  720
SSHSIQQQLD NGTQHRASDG HHPMHAMPAG RGLSGRGDVG NRPHSWN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	4e-09	C2H2 family protein