PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG78156.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 891aa MW: 98900 Da PI: 9.2368

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG78156.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.5	5.3e-11	101	175	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + aL++arr m++++ r k ++ +We+v +++++ g++r + C +kw+nl +++kk+ + ++ GBG78156.1 101 WSVGDTIALVRARRdqdlyfaGMGTSFARMKTREWKWEDVRARLQSMGVTRDVVDCGKKWDNLMQQFKKVHKFQN 175 899999******999988889999999**************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence
MWAECRQALH QRGTETITRG VQRLHEDEGD EAAVEEAQGC DDGDGDDDCN SDDLPDIRPL 60 GRRATKGGAT ARKGPAAKSR RSKKMDDDRG RSDGEGGRNF WSVGDTIALV RARRDQDLYF 120 AGMGTSFARM KTREWKWEDV RARLQSMGVT RDVVDCGKKW DNLMQQFKKV HKFQNLSGGK 180 DYFKLASKDR RSEGFSFVMD RSVYDEMEAM TKGDHTIHPK NLADTGATGG VQMPAGAGAA 240 GDTMATEAQS HYEVARFFAV VVGLVCLRRR RFFAVDLFDL LLAVEPSRRG SVSLLEWSGV 300 HQSPRSSSRR GAVHVGFVSF TCGTSSVSSS IVALALRRSP SRRGYVSPLR RSAVASQRSS 360 SRRGEVFAGF ISFSRSRRRG RGVHGKGEDE LLPKAAKALV RRRREQRRGH KRSLTEAGNM 420 SMRSGARGKK RENIPANSQG RERGRRHVPK AKRLRSEEAS ASLPHRRGRS WTAANEEEDD 480 DVFTTEEEAV EENVAAPPGS TLQRSCDQSG ARRLATPPPE AQQVRAHNTQ KAKEVVVDVG 540 AAVSSSNVGV VARAREEVPV VEREAARVDN KGEREDEDPL LSRVRRGGMA RDLADRARLW 600 VDDKAFWTTR ERRRLSVVMP KSSTTLTRIA DPPQLHEAIA HATAAENIAL HVLHGWVFKS 660 GNRPRGFNVA FQYALELVAT DIVRVMWNGE EWSNVVSAPV CAHTIDLNMD LPLWFAGTNI 720 EGRPEDDDMA AHQESTVICI AHAFRATVQM GGIVDGDFIS HERLCRIADC FRLLLAACMW 780 LMRMAGDAAR SHYEAFYFAK LVAKPTLVAS MHRAFDHRQS IIRATNAVTE RLGKANATLG 840 EYPKYIPDWA SCGIVFGQDA SITGPEDAKR RDWLGFSPLE DEDDDDGKED A

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence

MWAECRQALH QRGTETITRG VQRLHEDEGD EAAVEEAQGC DDGDGDDDCN SDDLPDIRPL  60
GRRATKGGAT ARKGPAAKSR RSKKMDDDRG RSDGEGGRNF WSVGDTIALV RARRDQDLYF  120
AGMGTSFARM KTREWKWEDV RARLQSMGVT RDVVDCGKKW DNLMQQFKKV HKFQNLSGGK  180
DYFKLASKDR RSEGFSFVMD RSVYDEMEAM TKGDHTIHPK NLADTGATGG VQMPAGAGAA  240
GDTMATEAQS HYEVARFFAV VVGLVCLRRR RFFAVDLFDL LLAVEPSRRG SVSLLEWSGV  300
HQSPRSSSRR GAVHVGFVSF TCGTSSVSSS IVALALRRSP SRRGYVSPLR RSAVASQRSS  360
SRRGEVFAGF ISFSRSRRRG RGVHGKGEDE LLPKAAKALV RRRREQRRGH KRSLTEAGNM  420
SMRSGARGKK RENIPANSQG RERGRRHVPK AKRLRSEEAS ASLPHRRGRS WTAANEEEDD  480
DVFTTEEEAV EENVAAPPGS TLQRSCDQSG ARRLATPPPE AQQVRAHNTQ KAKEVVVDVG  540
AAVSSSNVGV VARAREEVPV VEREAARVDN KGEREDEDPL LSRVRRGGMA RDLADRARLW  600
VDDKAFWTTR ERRRLSVVMP KSSTTLTRIA DPPQLHEAIA HATAAENIAL HVLHGWVFKS  660
GNRPRGFNVA FQYALELVAT DIVRVMWNGE EWSNVVSAPV CAHTIDLNMD LPLWFAGTNI  720
EGRPEDDDMA AHQESTVICI AHAFRATVQM GGIVDGDFIS HERLCRIADC FRLLLAACMW  780
LMRMAGDAAR SHYEAFYFAK LVAKPTLVAS MHRAFDHRQS IIRATNAVTE RLGKANATLG  840
EYPKYIPDWA SCGIVFGQDA SITGPEDAKR RDWLGFSPLE DEDDDDGKED A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-07	Trihelix family protein