PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77717.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 581aa MW: 63407.1 Da PI: 8.3308

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.9	1.7e-10	326	395	2	64
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykki 64 W+ ++ Li+a+r+ + +l+++ +++ +W +v k++ + g+ r + +C +kw+nl + +kk+ GBG77717.1 326 WSVEHMVSLIRAKRDQDAQLQASGhsftrmrSREWKWLDVRKRLLKVGIDRPADKCGKKWDNLMQHFKKV 395 999*********999999976333444449**********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MADVFRKLLL LLLAVILLLV VVFVQVCILG RLPSRGRRKG RARKSVAMDR RRPNLSTLSA 60 PYPDDRPPIC TGVDRRAAGP SPYEGLPPHL QPLPDSDEGE AEVDVSRTVP LGSGSTQEWT 120 GSQLYDRRPA KYGQSFTSLL HEGAEEEECL PPIDLTFGLQ SGSPSSATRT VVVNPHPDDD 180 AGQVTLGGRG TRGGAAAEVT SGKTTAWPRT QATSRARIWK EVRKELRRQQ EDSITQGVQR 240 LRVGERSEQA DVVGGVGDVW TTTDEFQCDV EEDDTADVFP VRAPNMGGRG GRGRASTTAV 300 RRRTRSSAGS TDAEGEGDGE GGRNFWSVEH MVSLIRAKRD QDAQLQASGH SFTRMRSREW 360 KWLDVRKRLL KVGIDRPADK CGKKWDNLMQ HFKKVHLFMG TSGREDFFQL TSQQRADKGF 420 NFTMDRAMYD EIKGAKERSH TVSPTNVADI GGAGGVQLAS AQSAPRESVG DGDAAADGID 480 EDDTSARGGS HTSGSPAGLG KRKNVRKQTF DALAESMDKH GVLMASTMES ASKRQCSIPI 540 RQCEAIEAEV EIQKQHCAAS TEVSKLMCQA LLEIAKAIRE R

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MADVFRKLLL LLLAVILLLV VVFVQVCILG RLPSRGRRKG RARKSVAMDR RRPNLSTLSA  60
PYPDDRPPIC TGVDRRAAGP SPYEGLPPHL QPLPDSDEGE AEVDVSRTVP LGSGSTQEWT  120
GSQLYDRRPA KYGQSFTSLL HEGAEEEECL PPIDLTFGLQ SGSPSSATRT VVVNPHPDDD  180
AGQVTLGGRG TRGGAAAEVT SGKTTAWPRT QATSRARIWK EVRKELRRQQ EDSITQGVQR  240
LRVGERSEQA DVVGGVGDVW TTTDEFQCDV EEDDTADVFP VRAPNMGGRG GRGRASTTAV  300
RRRTRSSAGS TDAEGEGDGE GGRNFWSVEH MVSLIRAKRD QDAQLQASGH SFTRMRSREW  360
KWLDVRKRLL KVGIDRPADK CGKKWDNLMQ HFKKVHLFMG TSGREDFFQL TSQQRADKGF  420
NFTMDRAMYD EIKGAKERSH TVSPTNVADI GGAGGVQLAS AQSAPRESVG DGDAAADGID  480
EDDTSARGGS HTSGSPAGLG KRKNVRKQTF DALAESMDKH GVLMASTMES ASKRQCSIPI  540
RQCEAIEAEV EIQKQHCAAS TEVSKLMCQA LLEIAKAIRE R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	52	RRKGRARKSVAMDRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-06	Trihelix family protein