PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77486.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

bHLH

Protein Properties

Length: 1099aa MW: 118326 Da PI: 4.7731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.3e-12	795	839	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++Er RR+r+N+afe Lr +P a ++ Ka+ Le A++YI+ Lq GBG77486.1 795 AIAERDRRRRMNQAFEALRGKVPDA-----PRRGKADLLECATRYISRLQ 839 579*******************9.....6999*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence
MIARPKCDIF SLMIENPRIV FSIRWIYSKE LSSFVWGGGC YRKAVFDEGQ GCRAVGTSED 60 GLENGVRKVC KEESQSSDDD SSKGSSGRAH SPKSSLCNCE HTARCCCETE SPAVDMGISE 120 LSEAMFRKLF NTNNAFAMVQ AGLRSQAVNS NKPQWYCLPS ASPFQMALCC IFTKTEHAVY 180 EFGLIAGLNQ VDLAGASPIN KLVEKLCCDV KGHDDFDPRA ESTNDLGEVD ETADMIQQSP 240 HGLVSGLDHN RFWFRRQGTA VESFYAAEST APSHSQFENS DNNSRPFGVG RTQKYRAAGV 300 GGNYPNDIIL HGYHPKFSVG SGQGAGDVRE NAGGLISRHL QGANFSGVDG MNVMSCMLGG 360 RHGKLAARFT WSEQSSLSQD FAASDNEMYG IDWVEDPGNQ MDTISGASDL ITSSTYGSPP 420 SPTSGLCSNL LAQESSVAMK PRYDSISLPG GSLSDGTMCS HLVSGGADKV IQGQGDILDQ 480 GEREVMYSRV PSEDYGPGES MLPFESSSKW DPEMNPGFSL GFSEEDLDGV SEESRLDGFL 540 EDPSQHAGDN FGISRTQFEM DPLQDGIGLG IADDRPCNAH QQSVASISPG SLEQLLASAG 600 SYADPAYASG DSVEKILPTV SSQEHAEPER TAMAFDDKKS SSSRNATYQV TSESPIIHSK 660 MGRSQMTCPI PDVDCGGAPK RRSPRAGSGD GGVSSSQART RSSQPSLVSA PVSSPPLLQS 720 AKPEMDGCSK PEVSCSEGGE NKQTQKNSTE RKRPRRGGGN QAQTEEKIMY DDPDDCEGTG 780 KGPGKRRHSE PNSTAIAERD RRRRMNQAFE ALRGKVPDAP RRGKADLLEC ATRYISRLQE 840 LLACRGVSGA SLAAEGKGNE EGGLAFDRED TQQDVDAGVQ IRQQSGGACE TSNPEKERNA 900 QGLLSAGNED SDSDVGVHSD AASTGAVSMD EDPVTMKVGE ESVHGAVKVL SRRWVAEKHS 960 PCEMQEVSRR ALASCSAAAR GKEKGLHVAE DEGSHPTSPS MASQGVVKCE FHIAETDGCV 1020 QRVVLSYPAE GYSENCLARI LCQLASFKLQ VRRTTMDVEK GWTQVNIGFE DEQGLSESSQ 1080 ALCQLEESLR EIFFQIHRD

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence

MIARPKCDIF SLMIENPRIV FSIRWIYSKE LSSFVWGGGC YRKAVFDEGQ GCRAVGTSED  60
GLENGVRKVC KEESQSSDDD SSKGSSGRAH SPKSSLCNCE HTARCCCETE SPAVDMGISE  120
LSEAMFRKLF NTNNAFAMVQ AGLRSQAVNS NKPQWYCLPS ASPFQMALCC IFTKTEHAVY  180
EFGLIAGLNQ VDLAGASPIN KLVEKLCCDV KGHDDFDPRA ESTNDLGEVD ETADMIQQSP  240
HGLVSGLDHN RFWFRRQGTA VESFYAAEST APSHSQFENS DNNSRPFGVG RTQKYRAAGV  300
GGNYPNDIIL HGYHPKFSVG SGQGAGDVRE NAGGLISRHL QGANFSGVDG MNVMSCMLGG  360
RHGKLAARFT WSEQSSLSQD FAASDNEMYG IDWVEDPGNQ MDTISGASDL ITSSTYGSPP  420
SPTSGLCSNL LAQESSVAMK PRYDSISLPG GSLSDGTMCS HLVSGGADKV IQGQGDILDQ  480
GEREVMYSRV PSEDYGPGES MLPFESSSKW DPEMNPGFSL GFSEEDLDGV SEESRLDGFL  540
EDPSQHAGDN FGISRTQFEM DPLQDGIGLG IADDRPCNAH QQSVASISPG SLEQLLASAG  600
SYADPAYASG DSVEKILPTV SSQEHAEPER TAMAFDDKKS SSSRNATYQV TSESPIIHSK  660
MGRSQMTCPI PDVDCGGAPK RRSPRAGSGD GGVSSSQART RSSQPSLVSA PVSSPPLLQS  720
AKPEMDGCSK PEVSCSEGGE NKQTQKNSTE RKRPRRGGGN QAQTEEKIMY DDPDDCEGTG  780
KGPGKRRHSE PNSTAIAERD RRRRMNQAFE ALRGKVPDAP RRGKADLLEC ATRYISRLQE  840
LLACRGVSGA SLAAEGKGNE EGGLAFDRED TQQDVDAGVQ IRQQSGGACE TSNPEKERNA  900
QGLLSAGNED SDSDVGVHSD AASTGAVSMD EDPVTMKVGE ESVHGAVKVL SRRWVAEKHS  960
PCEMQEVSRR ALASCSAAAR GKEKGLHVAE DEGSHPTSPS MASQGVVKCE FHIAETDGCV  1020
QRVVLSYPAE GYSENCLARI LCQLASFKLQ VRRTTMDVEK GWTQVNIGFE DEQGLSESSQ  1080
ALCQLEESLR EIFFQIHRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	785	804	KRRHSEPNSTAIAERDRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46510.1	5e-07	bHLH family protein