PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG77458.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 1351aa MW: 149757 Da PI: 7.0399

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG77458.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	488	508	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ffa+ G+Ck+G++C+F Hg GBG77458.1 488 PCLFFAK-GYCKHGSNCRFLHG 508 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1351 aa Download sequence
MDWQEAARLV FSRVQALDAE NVSKIIGWLL MQNRAEKEML RLALASETVL RALVVKTRKE 60 LGIVQGGEER KQQQQQQQQQ QQQQQQQQQQ RQEEEEEEEE EEEEEEQGQQ PASGRAALQQ 120 HVTTVGVKLR GQGLCKGNYN PSSRGSNRRR SHQSDLTSVE EKRQQQQAQE SIQPSAPHLG 180 NRLCRESSRR PASSTAVLAT AAAAAAAGGG GGGGGGGGGG GGRKAESSTR IGRFPTTSMG 240 LSVVHSPTGM LTSTNDLSSH PHPLTLILPS RQGQTAPTLQ PQQQQQQQQQ QQWTAALQQG 300 QLTEAAAASM THQQQRSQQQ QKQKQRMSNV GVSAHAMGHS NNQHNHNHNN HHNDNHHNHY 360 DHHNHHNHHN QQQQQHETQL RKEDDLFFDA DELFAAGLNH HSPSCRSGGG GGGGGGGGGG 420 GGRIISAGEV ISSPLQHQNP FSHHHHQQQR QQSLAMDTIK MPNAIAIDDG DGPDATAPHS 480 QAYFAWKPCL FFAKGYCKHG SNCRFLHGSA KNGTGSSSGG HLSSVAGCGS GSGSGDSGPV 540 RNPTSGGSPP RAGGDGCSDV SSGSGSGTAT SSGSSSSSHR LEAELCELLR GRRSPVSIAS 600 LPQLYSERFG KSLQAEGYLT ESQRHGRVGG YSLTKLLAQL KDTVRLIERP HGQHAVVLFE 660 DADKHLGTIH TEREESSHTN NSSAHQIYLT FPADSTFTED DLSEYFSEPG DEVGEKEVSH 720 SDRVAAAIAA IAQDDGNGYR PVEFMSARMP SEKVATSTYE RELYALRQAL EHWKHYLLGR 780 HFKVYSDHET LRWLKTQAKM KPKLTRWAAE LDQYDFELKP VKGKQTAIKL ADGKTQQLLD 840 RCIEAVPVYF APHACEPVTF DILDTDFDII LGMPWLASAD HTVNFHRRTL SVRDAFGAEV 900 ACTIPLPHSS IRCQVVMAKS FRATYAYEQP EEISICFLRT VAVADSSPMD LSSDPRVVRL 960 LDEFADIFES PTGVVPGRPI SHEIILEAGV VPPKVCIYRM SEEELEVLHA QLDDLLAKGW 1020 IRPSSSPYGA PVLFVRQKNK DLRLCIDYGK LNVQTVKNAV PLPRIDDLLE QLGGAKYFSK 1080 LDLKSGYHQI SIQLNDRYKT AFKTRYGHFE WVVMPFGLTN APTTFQAAMT NEFRAMLDRF 1140 VLVYLDDILV YSRTLEDHLG HLRRVLETLR RAKYKAKRDE WEFVRQELEY LGHFVTPEGI 1200 SPLSDKIQAV QEGTEPRNVT DVRSFLGLTG YYQRFIKGYS KIAAHLNKLQ CEDRPFDFGE 1260 EARGSFFSFK AALLSAEVLR IYDPFALTRV TTDASGYGIG AVLEQHDGVD WHPVEYFSKK 1320 VPLVHSIDDA CKKELLAFVH ELKRWRHFLL C

Sequence ? help Back to Top

Protein Sequence Length: 1351 aa Download sequence

MDWQEAARLV FSRVQALDAE NVSKIIGWLL MQNRAEKEML RLALASETVL RALVVKTRKE  60
LGIVQGGEER KQQQQQQQQQ QQQQQQQQQQ RQEEEEEEEE EEEEEEQGQQ PASGRAALQQ  120
HVTTVGVKLR GQGLCKGNYN PSSRGSNRRR SHQSDLTSVE EKRQQQQAQE SIQPSAPHLG  180
NRLCRESSRR PASSTAVLAT AAAAAAAGGG GGGGGGGGGG GGRKAESSTR IGRFPTTSMG  240
LSVVHSPTGM LTSTNDLSSH PHPLTLILPS RQGQTAPTLQ PQQQQQQQQQ QQWTAALQQG  300
QLTEAAAASM THQQQRSQQQ QKQKQRMSNV GVSAHAMGHS NNQHNHNHNN HHNDNHHNHY  360
DHHNHHNHHN QQQQQHETQL RKEDDLFFDA DELFAAGLNH HSPSCRSGGG GGGGGGGGGG  420
GGRIISAGEV ISSPLQHQNP FSHHHHQQQR QQSLAMDTIK MPNAIAIDDG DGPDATAPHS  480
QAYFAWKPCL FFAKGYCKHG SNCRFLHGSA KNGTGSSSGG HLSSVAGCGS GSGSGDSGPV  540
RNPTSGGSPP RAGGDGCSDV SSGSGSGTAT SSGSSSSSHR LEAELCELLR GRRSPVSIAS  600
LPQLYSERFG KSLQAEGYLT ESQRHGRVGG YSLTKLLAQL KDTVRLIERP HGQHAVVLFE  660
DADKHLGTIH TEREESSHTN NSSAHQIYLT FPADSTFTED DLSEYFSEPG DEVGEKEVSH  720
SDRVAAAIAA IAQDDGNGYR PVEFMSARMP SEKVATSTYE RELYALRQAL EHWKHYLLGR  780
HFKVYSDHET LRWLKTQAKM KPKLTRWAAE LDQYDFELKP VKGKQTAIKL ADGKTQQLLD  840
RCIEAVPVYF APHACEPVTF DILDTDFDII LGMPWLASAD HTVNFHRRTL SVRDAFGAEV  900
ACTIPLPHSS IRCQVVMAKS FRATYAYEQP EEISICFLRT VAVADSSPMD LSSDPRVVRL  960
LDEFADIFES PTGVVPGRPI SHEIILEAGV VPPKVCIYRM SEEELEVLHA QLDDLLAKGW  1020
IRPSSSPYGA PVLFVRQKNK DLRLCIDYGK LNVQTVKNAV PLPRIDDLLE QLGGAKYFSK  1080
LDLKSGYHQI SIQLNDRYKT AFKTRYGHFE WVVMPFGLTN APTTFQAAMT NEFRAMLDRF  1140
VLVYLDDILV YSRTLEDHLG HLRRVLETLR RAKYKAKRDE WEFVRQELEY LGHFVTPEGI  1200
SPLSDKIQAV QEGTEPRNVT DVRSFLGLTG YYQRFIKGYS KIAAHLNKLQ CEDRPFDFGE  1260
EARGSFFSFK AALLSAEVLR IYDPFALTRV TTDASGYGIG AVLEQHDGVD WHPVEYFSKK  1320
VPLVHSIDDA CKKELLAFVH ELKRWRHFLL C