PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG76344.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1081aa MW: 117271 Da PI: 6.4606

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG76344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.3	1.7e-12	376	447	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi+a+r+ + ++r r k ++ +W++v++ ++ g+ r++++C +kw+nl + +kk+ + GBG76344.1 376 WSVEHIIALIRAKRDQDAHMRgmghayaRMKPREWKWQDVAQGLKNVGLYRNAEKCGKKWDNLMQPFKKVHH 447 9***********7777777444433366899**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence
MADVFRRLPL LLLVVLLLLL VVLFRVCILG NVPPRRRKTR SSMKDARMEA RQAIPRCGGE 60 QVGGRRCGGS LSTIGRASQR VGCDALPPHL QPLPGSSDEE EEVERRPQTV SLGSGSTQEW 120 SATELCGTGG GVYEQSFTEL LRPGLGEDEG DGRVNMSFGL STGRSTTPSR TVLVRPHPGD 180 EGGQLTVVDR SARTRALASE TVGANRNSST AQPRAASLSK GAPGRPEWMQ LPSPLSAASE 240 VARGRGIGVD GGTDFLDVGD GRDGREVWRD LPRDHRLRRE EYITRGVEHL NVGDRENENE 300 TDDPPAEADD DDEGNDVECG EGGGGQASPS LQTDMAGKGG KSKPSGRNAH SRAKKGQGKG 360 SGGEGDGDAE EKRNFWSVEH IIALIRAKRD QDAHMRGMGH AYARMKPREW KWQDVAQGLK 420 NVGLYRNAEK CGKKWDNLMQ PFKKVHHFQS PSGGADFFQL TTKERASRGF NLTMDRAVYD 480 EIEGSTGMNH TIHPRNLADT GASGGVRPPL TSYVDLDSVA DGEGGAGRED DEEGSTRGSS 540 QTTGTPGGSG KRKNTRQQTF KALTECMEKH GELMASTMES ASKRQCSIQV RQCEALEAEV 600 EVQRKHYVPR IAGNSEGHSG RDVVEVAVVE EEMTNDDDDF EDDDNEPLLR KARVGSARGI 660 RINEGGEGTP TARRGGGVAA ANQPVFVDVA RDVGRDVARR DVAGRAKEGA ASHETSQCVL 720 APVNRPRTPA ADVAGGSQAA VEGGTSRSPA VAARGGAVAI PGEAVDVPKG GDGAAGGEDD 780 EALVHRLRGQ RAATHAMDAA AKLWEDDNRF WNDTQGSVVV RIIQEARAYL VAVARGVQPP 840 AIRRSISLPH NSIPQHKIED ESELNAAKER ALKVQTISLR AIHSWVFKSE SRERGYHMAY 900 QYALNHAATD IARAMWSPED WSSLVSPMLF CTTLNADMKL PLWFVGVNIV DRHEDDECAA 960 YQEACVQRLV RDFTSTVGTA EAMDGGRVSY ERLKGMAEVM TYLLAVTMWI MRMAGDDPRS 1020 HYDAWVFVQL TAKTTLLASM NRQFDARRHI TQSAQVMTDK LGRPPPTFAP QPVNIPDWAS 1080 K

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence

MADVFRRLPL LLLVVLLLLL VVLFRVCILG NVPPRRRKTR SSMKDARMEA RQAIPRCGGE  60
QVGGRRCGGS LSTIGRASQR VGCDALPPHL QPLPGSSDEE EEVERRPQTV SLGSGSTQEW  120
SATELCGTGG GVYEQSFTEL LRPGLGEDEG DGRVNMSFGL STGRSTTPSR TVLVRPHPGD  180
EGGQLTVVDR SARTRALASE TVGANRNSST AQPRAASLSK GAPGRPEWMQ LPSPLSAASE  240
VARGRGIGVD GGTDFLDVGD GRDGREVWRD LPRDHRLRRE EYITRGVEHL NVGDRENENE  300
TDDPPAEADD DDEGNDVECG EGGGGQASPS LQTDMAGKGG KSKPSGRNAH SRAKKGQGKG  360
SGGEGDGDAE EKRNFWSVEH IIALIRAKRD QDAHMRGMGH AYARMKPREW KWQDVAQGLK  420
NVGLYRNAEK CGKKWDNLMQ PFKKVHHFQS PSGGADFFQL TTKERASRGF NLTMDRAVYD  480
EIEGSTGMNH TIHPRNLADT GASGGVRPPL TSYVDLDSVA DGEGGAGRED DEEGSTRGSS  540
QTTGTPGGSG KRKNTRQQTF KALTECMEKH GELMASTMES ASKRQCSIQV RQCEALEAEV  600
EVQRKHYVPR IAGNSEGHSG RDVVEVAVVE EEMTNDDDDF EDDDNEPLLR KARVGSARGI  660
RINEGGEGTP TARRGGGVAA ANQPVFVDVA RDVGRDVARR DVAGRAKEGA ASHETSQCVL  720
APVNRPRTPA ADVAGGSQAA VEGGTSRSPA VAARGGAVAI PGEAVDVPKG GDGAAGGEDD  780
EALVHRLRGQ RAATHAMDAA AKLWEDDNRF WNDTQGSVVV RIIQEARAYL VAVARGVQPP  840
AIRRSISLPH NSIPQHKIED ESELNAAKER ALKVQTISLR AIHSWVFKSE SRERGYHMAY  900
QYALNHAATD IARAMWSPED WSSLVSPMLF CTTLNADMKL PLWFVGVNIV DRHEDDECAA  960
YQEACVQRLV RDFTSTVGTA EAMDGGRVSY ERLKGMAEVM TYLLAVTMWI MRMAGDDPRS  1020
HYDAWVFVQL TAKTTLLASM NRQFDARRHI TQSAQVMTDK LGRPPPTFAP QPVNIPDWAS  1080
K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	38	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-11	Trihelix family protein