PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG76243.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1947aa MW: 214302 Da PI: 8.0453

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG76243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.9	3.4e-10	1207	1281	2	69
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ +e ++L++ +re e +l r + k+ +W +++k+m+ +g + + C +kw+nl + ykki++ ++ GBG76243.1 1207 WSTDEQMLLVRCKREQEMHLAglghnygRMRTKEWKWVDIAKRMANGGSPKDADDCMKKWDNLFQNYKKIQRFQN 1281 9***********66666653333333778************************************987655 PP

Sequence ? help Back to Top
Protein Sequence Length: 1947 aa Download sequence
MVRGPNARQN GASSSAGDEE VTTAAVLQEM LNRIEAMKTG MNTMNVRLDL PRAKGELQKV 60 QSSREHRTPR PPPQHMRQED PYDALKSSRP KSTYTWLQLR GFNDWSEQGM LELNDDWIYK 120 QTGNHPKTVD VHYGQLKEML IKYGELAQLT YDATTFDSTS RYCGQCTMAP KGLFNLLSAT 180 PEHVLDGLIH IGDNCDDGGD DGGEAASSVN RTITDSESHP SNQSVPARPR SSSTSKWRYR 240 TEYKDVRYLY ATSRADGPLK PLLLLWNYLF PRRAPLFIDA PGDGATLVDT NWFGYVAISD 300 PSPGFGQQGR DLVVAWRGTQ ADLEWAQDFK GWPVPLHKDK AAFGHSKESK QSAQRRKVSV 360 AQGFHQLYTS TLSDLSLHNR GSARCQLHRN IRQLLCKYRD IDSITVVGHS LGGALAVLSA 420 YDIVDSGLNV VAVKLEQARE GDASPLDDEH PETDLGLRVI PVTVFTYAAP RVGNRAFRDA 480 FQALGKRGLK CLRVVNIHDI VPRTPGLLIN ERRSQVVQWL GRFLHVPSYF HVGKVIEVDS 540 FKPPLLTVRK YQGLGVVHNM EVLLHTLDGW RGPNAQFLMT GIRPFVLANK GVDALDPALR 600 VKAAWSTPSN NRIVFDSKHG TGFERYLDGT DGCDRYNPIR EKLIDGTFKP AVGVYSYLRT 660 KSYEWMDSFR RSFRSVVGNT PNRPNPHTGK HPTSMCDHCK KNLASEFGQI QLASPDNLMT 720 NIPERTVTSR EEFFSFEDMD IGWCGSRRRK RVVEHPHKCI VCFDGKSYID DDRTPKERLA 780 TAIDMNHPLT WQTSLRHPSS SSSSSSSSSS YVGYSGSSGF VRGHARRKFS RTSRARSPVN 840 VEFMADLQRR LPLLLLVVVV FLFAVFLHVC LSCRPWKQRR KRRASTKRAV LQEEHPMAGM 900 KARVILLAAE GGRRPATTEP SRRYDPSMYN HLPSWETPLP PSDEEPEGDE HPMFPLANRS 960 TQLLSQMVLV GGSASNERGE YTSLLQQGLG DDDDGGVDLR FGLSFGGARE ASRTVITAAP 1020 ASARGLQQPR REQTGPPTLR GGASVVGGVG SSPAARQHVS GAPSGERLTD NWDVPTGAAA 1080 ASLRTSGARS SMLNRTTAAP PEGRDEGACR PPTGLGASVE NITRGVSNMR AHSDGGDDDG 1140 CGGDDADDGF REEVEGGDDD DDNAVRPVGK TGGRGIGRNN RGGLGRSVGR GGRGGVTDDG 1200 GKSATYWSTD EQMLLVRCKR EQEMHLAGLG HNYGRMRTKE WKWVDIAKRM ANGGSPKDAD 1260 DCMKKWDNLF QNYKKIQRFQ NASGRPDFFK LSNDERKEHN FKFRMERVLY NEIHSDMLGN 1320 HTIFPPNIAD TGSPNGVQLP RRGAGGGESV DSDGGGDGCP EERSSARDSD VNACSVAGGG 1380 KRKNARQQAL ESITDVMDRH GELMSSTIES SSKRQCSISS RQCDIQERQC DILAQEVAVQ 1440 KAHYAASDEA QRMMCHALLE IAAAIRGRLT ISAASMSTRG TVCGTKRDAA ATVGLAQAKG 1500 RRHIPKSKKV RSDEASRNVP ARGFEGWAAT TEMESDDDFG MEEPQAEAMA SAVRQSARQR 1560 ASDHSAPKRM HPPAPEAQQA RGRDARKDKA AVVVAEGDDD ETLHKILQPR AAGGTATVNS 1620 APVATAREEE AVAATAREEA AVAATAREDA RGEKTTDREG GDVGPSRRLP SLVILPKSST 1680 RVARISDPSQ LQQAISRAAK VENVALRVLH GWVFKSGNRA KGYNLAYQYA LESVATDIAR 1740 AMWYAEDWSN VVSAPICGHT IDLNMDLPLW FVGAHIDDRP DDDDMAAYQE STIICIAQAF 1800 RAAVQMGAHI DGDFISYDRL CRVADCFRLL LAATMWIMRM AGDDFRNHYE AFYSVNLLAR 1860 PTLVASMHRS FDHRRSVVWA AKAVTERLGK PNPTFGEHPN YIPQWAPSDI TFGHDTSVTG 1920 PEDCKRLDWL GSGPPDDDGD DDKKEGA

Sequence ? help Back to Top

Protein Sequence Length: 1947 aa Download sequence

MVRGPNARQN GASSSAGDEE VTTAAVLQEM LNRIEAMKTG MNTMNVRLDL PRAKGELQKV  60
QSSREHRTPR PPPQHMRQED PYDALKSSRP KSTYTWLQLR GFNDWSEQGM LELNDDWIYK  120
QTGNHPKTVD VHYGQLKEML IKYGELAQLT YDATTFDSTS RYCGQCTMAP KGLFNLLSAT  180
PEHVLDGLIH IGDNCDDGGD DGGEAASSVN RTITDSESHP SNQSVPARPR SSSTSKWRYR  240
TEYKDVRYLY ATSRADGPLK PLLLLWNYLF PRRAPLFIDA PGDGATLVDT NWFGYVAISD  300
PSPGFGQQGR DLVVAWRGTQ ADLEWAQDFK GWPVPLHKDK AAFGHSKESK QSAQRRKVSV  360
AQGFHQLYTS TLSDLSLHNR GSARCQLHRN IRQLLCKYRD IDSITVVGHS LGGALAVLSA  420
YDIVDSGLNV VAVKLEQARE GDASPLDDEH PETDLGLRVI PVTVFTYAAP RVGNRAFRDA  480
FQALGKRGLK CLRVVNIHDI VPRTPGLLIN ERRSQVVQWL GRFLHVPSYF HVGKVIEVDS  540
FKPPLLTVRK YQGLGVVHNM EVLLHTLDGW RGPNAQFLMT GIRPFVLANK GVDALDPALR  600
VKAAWSTPSN NRIVFDSKHG TGFERYLDGT DGCDRYNPIR EKLIDGTFKP AVGVYSYLRT  660
KSYEWMDSFR RSFRSVVGNT PNRPNPHTGK HPTSMCDHCK KNLASEFGQI QLASPDNLMT  720
NIPERTVTSR EEFFSFEDMD IGWCGSRRRK RVVEHPHKCI VCFDGKSYID DDRTPKERLA  780
TAIDMNHPLT WQTSLRHPSS SSSSSSSSSS YVGYSGSSGF VRGHARRKFS RTSRARSPVN  840
VEFMADLQRR LPLLLLVVVV FLFAVFLHVC LSCRPWKQRR KRRASTKRAV LQEEHPMAGM  900
KARVILLAAE GGRRPATTEP SRRYDPSMYN HLPSWETPLP PSDEEPEGDE HPMFPLANRS  960
TQLLSQMVLV GGSASNERGE YTSLLQQGLG DDDDGGVDLR FGLSFGGARE ASRTVITAAP  1020
ASARGLQQPR REQTGPPTLR GGASVVGGVG SSPAARQHVS GAPSGERLTD NWDVPTGAAA  1080
ASLRTSGARS SMLNRTTAAP PEGRDEGACR PPTGLGASVE NITRGVSNMR AHSDGGDDDG  1140
CGGDDADDGF REEVEGGDDD DDNAVRPVGK TGGRGIGRNN RGGLGRSVGR GGRGGVTDDG  1200
GKSATYWSTD EQMLLVRCKR EQEMHLAGLG HNYGRMRTKE WKWVDIAKRM ANGGSPKDAD  1260
DCMKKWDNLF QNYKKIQRFQ NASGRPDFFK LSNDERKEHN FKFRMERVLY NEIHSDMLGN  1320
HTIFPPNIAD TGSPNGVQLP RRGAGGGESV DSDGGGDGCP EERSSARDSD VNACSVAGGG  1380
KRKNARQQAL ESITDVMDRH GELMSSTIES SSKRQCSISS RQCDIQERQC DILAQEVAVQ  1440
KAHYAASDEA QRMMCHALLE IAAAIRGRLT ISAASMSTRG TVCGTKRDAA ATVGLAQAKG  1500
RRHIPKSKKV RSDEASRNVP ARGFEGWAAT TEMESDDDFG MEEPQAEAMA SAVRQSARQR  1560
ASDHSAPKRM HPPAPEAQQA RGRDARKDKA AVVVAEGDDD ETLHKILQPR AAGGTATVNS  1620
APVATAREEE AVAATAREEA AVAATAREDA RGEKTTDREG GDVGPSRRLP SLVILPKSST  1680
RVARISDPSQ LQQAISRAAK VENVALRVLH GWVFKSGNRA KGYNLAYQYA LESVATDIAR  1740
AMWYAEDWSN VVSAPICGHT IDLNMDLPLW FVGAHIDDRP DDDDMAAYQE STIICIAQAF  1800
RAAVQMGAHI DGDFISYDRL CRVADCFRLL LAATMWIMRM AGDDFRNHYE AFYSVNLLAR  1860
PTLVASMHRS FDHRRSVVWA AKAVTERLGK PNPTFGEHPN YIPQWAPSDI TFGHDTSVTG  1920
PEDCKRLDWL GSGPPDDDGD DDKKEGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-07	Trihelix family protein