PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG74571.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 1544aa MW: 161251 Da PI: 6.8853

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG74571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.6e-10	2	40	9	48
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 de l +av+ + g++Wk+Ia+ + Rt+ qc +rwqk+l GBG74571.1 2 DETLRRAVQCYKGKNWKRIAEFFA-DRTDVQCLHRWQKVL 40 799*******************.**********986 PP
2	Myb_DNA-binding	62.8	6.7e-20	46	92	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l GBG74571.1 46 KGPWTKEEDERIIQLVNQYGAKKWSVIAQNLP-GRIGKQCRERWHNHL 92 79****************************.***********97 PP
3	Myb_DNA-binding	58.5	1.5e-18	98	142	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT+eEd+ l++a+ ++G++ W+ Ia++++ gRt++++k++w++ GBG74571.1 98 RDAWTEEEDLALIRAHFLYGNK-WAEIAKCLP-GRTDNSIKNHWNST 142 789*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1544 aa Download sequence
MDETLRRAVQ CYKGKNWKRI AEFFADRTDV QCLHRWQKVL NPDLVKGPWT KEEDERIIQL 60 VNQYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPNIKRDA WTEEEDLALI RAHFLYGNKW 120 AEIAKCLPGR TDNSIKNHWN STMKKRVDSG VFNADDPISV ALAATHGHPD ATLVGNPVQM 180 GVAAVSSSSS LGVESSLSSR IQKPVQVLSQ NAGVVGAEAH HPTTSLSMVI GGSGGMQSSS 240 LNRFSAQALC PNQVQKTSCS VQTSATDGVA FGGNCCPGKS DAAVSAGDDS EDAASVDGGL 300 KKPNNVRKEL LPNKVISRPP RPVPVLRPGV KINNDHLSTA TPAPPPPPVP PPPPPPPPVP 360 PPPVPHVSSS ALLPPIPSCC GSAAPASSIA LSAVQIPQAP VPTAMSLTGY LHNGAGTISG 420 MGLPSIPMAI PLPKSLPFSA SSGYPTPSGG PSGSGPLQMS ATIPSMGHSA VPSQSTCFPS 480 GMAPSSIQGP YHTVMTLHPT QGVAQGQHQI MGSHHHHHHH HHHHVVVGPF ASPAGQQGIR 540 ALATSTGTSS DGLGMVAMSM KSGTEFPPRM ASGGQSSMSL GMAHSQGIDS SLGYGMSRIG 600 QLVSVPQPQR AQDNFENGHQ AMTMPAEVAV VTSTGAEGPV SRLDVSVSSA MVPVEDQGSG 660 EPSSTGGQND NHEACTDELL RAASEVVTEY KYMNILHSMP DGGCAELGDS NEDVLFYEPP 720 KLNPMDLPFL EYDLSSPTDV SRKAFSPLGV SQMIMPAMCS PLLYGAFSPF AGQSPQSKLR 780 SAAQSFCSTP SILRKRRRKL DVTGGNGEGQ EGNLLLLQYG ESKKGVKAED KQGTADIVEQ 840 TREKEGEGTC GASSVPGQSE SPTTPDASSV SGDLEESTGK PAASVAPTVR PVMVSPSYNY 900 HNRDAMLQPC SASDSPSLLG LKGQVKGKDG SFQYRQITCR TPSKGSSGTG GSGGGAAGGS 960 TGWSNGNGNA TVKPGGEGSG QEGSGDATNG GGNSEGGARN AGGAVSKAMC MAGALKDCGR 1020 QERNVKRPRS FGSEGWAKAK NAGEDFQVRK KPDLGVLKNL PSAALSPKVA VLVEQRVNSQ 1080 TVLPEVLLRG TTAALQTDPP AGTGCAGASG GILTGPSAGV PCLSTVGAGP RVSKVVSPAT 1140 VSSTAMQRVG GTGVADGNSS ETEGCRMPGN EWVYCAVTDA PITCSPTGNP PDIVASGTCL 1200 GSAAGNENNY TGSPSGIWKP WPSSDAAKDC ATMKEGGANQ LIASGAIGRT SFSEYPNIGL 1260 LLEEGNDALG IMRHLNEHAS SAYSEAEDVL ARTARGDPSD RSVVEDGSPG SFKENQRGRS 1320 SSGFSSVSLN DCSSSYAGWL SPFGGLFSPD VYDIAITPLK HSSAADDSSN LLQPQPDPFS 1380 PSISWAAFAT TAFAMTMCSG LWASRNLGNL METALSPIDV LCRHSGWLLV KKEQRESESR 1440 KTAITELRKM AHKGGRKNGV VGEKDGGWRE AKEAERGRRR AEEEERRGGE EGEEEEAVRA 1500 VGVLHSKSGS GKSVFCSEDC HCKHEGVALW DMELDLNCYR CQSV

Sequence ? help Back to Top

Protein Sequence Length: 1544 aa Download sequence

MDETLRRAVQ CYKGKNWKRI AEFFADRTDV QCLHRWQKVL NPDLVKGPWT KEEDERIIQL  60
VNQYGAKKWS VIAQNLPGRI GKQCRERWHN HLNPNIKRDA WTEEEDLALI RAHFLYGNKW  120
AEIAKCLPGR TDNSIKNHWN STMKKRVDSG VFNADDPISV ALAATHGHPD ATLVGNPVQM  180
GVAAVSSSSS LGVESSLSSR IQKPVQVLSQ NAGVVGAEAH HPTTSLSMVI GGSGGMQSSS  240
LNRFSAQALC PNQVQKTSCS VQTSATDGVA FGGNCCPGKS DAAVSAGDDS EDAASVDGGL  300
KKPNNVRKEL LPNKVISRPP RPVPVLRPGV KINNDHLSTA TPAPPPPPVP PPPPPPPPVP  360
PPPVPHVSSS ALLPPIPSCC GSAAPASSIA LSAVQIPQAP VPTAMSLTGY LHNGAGTISG  420
MGLPSIPMAI PLPKSLPFSA SSGYPTPSGG PSGSGPLQMS ATIPSMGHSA VPSQSTCFPS  480
GMAPSSIQGP YHTVMTLHPT QGVAQGQHQI MGSHHHHHHH HHHHVVVGPF ASPAGQQGIR  540
ALATSTGTSS DGLGMVAMSM KSGTEFPPRM ASGGQSSMSL GMAHSQGIDS SLGYGMSRIG  600
QLVSVPQPQR AQDNFENGHQ AMTMPAEVAV VTSTGAEGPV SRLDVSVSSA MVPVEDQGSG  660
EPSSTGGQND NHEACTDELL RAASEVVTEY KYMNILHSMP DGGCAELGDS NEDVLFYEPP  720
KLNPMDLPFL EYDLSSPTDV SRKAFSPLGV SQMIMPAMCS PLLYGAFSPF AGQSPQSKLR  780
SAAQSFCSTP SILRKRRRKL DVTGGNGEGQ EGNLLLLQYG ESKKGVKAED KQGTADIVEQ  840
TREKEGEGTC GASSVPGQSE SPTTPDASSV SGDLEESTGK PAASVAPTVR PVMVSPSYNY  900
HNRDAMLQPC SASDSPSLLG LKGQVKGKDG SFQYRQITCR TPSKGSSGTG GSGGGAAGGS  960
TGWSNGNGNA TVKPGGEGSG QEGSGDATNG GGNSEGGARN AGGAVSKAMC MAGALKDCGR  1020
QERNVKRPRS FGSEGWAKAK NAGEDFQVRK KPDLGVLKNL PSAALSPKVA VLVEQRVNSQ  1080
TVLPEVLLRG TTAALQTDPP AGTGCAGASG GILTGPSAGV PCLSTVGAGP RVSKVVSPAT  1140
VSSTAMQRVG GTGVADGNSS ETEGCRMPGN EWVYCAVTDA PITCSPTGNP PDIVASGTCL  1200
GSAAGNENNY TGSPSGIWKP WPSSDAAKDC ATMKEGGANQ LIASGAIGRT SFSEYPNIGL  1260
LLEEGNDALG IMRHLNEHAS SAYSEAEDVL ARTARGDPSD RSVVEDGSPG SFKENQRGRS  1320
SSGFSSVSLN DCSSSYAGWL SPFGGLFSPD VYDIAITPLK HSSAADDSSN LLQPQPDPFS  1380
PSISWAAFAT TAFAMTMCSG LWASRNLGNL METALSPIDV LCRHSGWLLV KKEQRESESR  1440
KTAITELRKM AHKGGRKNGV VGEKDGGWRE AKEAERGRRR AEEEERRGGE EGEEEEAVRA  1500
VGVLHSKSGS GKSVFCSEDC HCKHEGVALW DMELDLNCYR CQSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	793	800	LRKRRRKL
2	794	798	RKRRR
3	794	827	RKRRRKLDVTGGNGEGQEGNLLLLQYGESKKGVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-77	MYB family protein