PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG73755.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1111aa MW: 119503 Da PI: 9.7915

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG73755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.7	5.4e-12	347	421	2	69
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + aLi+a+r+ + +l+ r k ++ +W +v +++++ g+er++++C +kw+nl +++kk+ + ++ GBG73755.1 347 WSIDDMVALIRAKRDQGAHLQgmgtayaRMKPRELKWLDVEQRLKKVGVEREAERCGKKWDNLMQQFKKVHRFQG 421 9999999*****66666653333322679************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1111 aa Download sequence
MADVFRRLPL LVLVVLLLVL VVLFHVCVVG IVPQRRRRRR CAKKDVSMDG RQAVCRSAGG 60 EGGGQRAGQS PSRGSRAVER SEYPHLPPHL QPLPDTSNEE EDNRRSRAVP LGSGSTQEWT 120 STELCGSREP SYGHGRLSSS TRTVLVDNRP DDDGAQVTAV ARSSKSPASS VRVASGNNRD 180 PRTQQYRASS ASRGASARPS WMLSPSPLSG NSSAARNRGE CGEHDCGIEE RGDRRDGREV 240 WEEQRRMLHP RRQESITRGV QRLRVVDDEN DGDTPDVGGN DQDLNDDDCG GGEDDAGQVS 300 PSKQSSMGGK GGRVKVSVRN GRRGKKAMGK GSVVEADGDA EGDRHFWSID DMVALIRAKR 360 DQGAHLQGMG TAYARMKPRE LKWLDVEQRL KKVGVEREAE RCGKKWDNLM QQFKKVHRFQ 420 GLSGKQDFFQ FTGKERLSKG FSFNMDHTGA PGGVRLPSAN SGDPESVGDR GAAVGLDDDG 480 DGSTRGSSQT TGGPTGFGKR KSTRQQTFDA LSECMEKHGA LVVSTMESNS KRKCSIQIRQ 540 CEALEAEVEV QKKHYAASDK VSKLMCHALL EIAKAIREHV PSPSTPSSDC ANVFPCAFVA 600 FFAVIICVFD TDVPHSNLVA FVTICAVTLS KDFDVVLYSL IIATLLGGET GRHSSHHPCV 660 SWRVCRAPWH PEVLDAGGLP GNRRSTRLSG IKGAATWRTN RESSSKGPLR YVESDFAESE 720 EIPMKRKSSR RQTGALRIDD VGERHSAGGR GANEQDVNVA ARLATGRAGG SAAMQQNRAP 780 LPRVSEPPAA QEVFVRGRTP STPRQTTATK VGVAAQGIGQ GIASRSPAHD ERGASTAVAA 840 RATEMAKAGA ATAGGASQAA EGGRSVGAAT VGASHAVEGA RAGGGNAGEG SRAGAVAGVG 900 EDDEALANRV RQRSAREGID VASKLWVDDI HFWNGTEGNA IVKLIAYIED RHEDDEQAAY 960 QEASVQRLVG AFTSAVSTAE GVDGGRVSHE RLKSVAEAMQ VMLAATMWLM RMGGGDRRAH 1020 YNTWVFVQLT AKPTLIASMH RSFDARRHIV QAATAITDKL AKPPITLLAP PLYIPDWVSI 1080 GVKFLARRHF VFPNGGSKAP LVGHRATGRR R

Sequence ? help Back to Top

Protein Sequence Length: 1111 aa Download sequence

MADVFRRLPL LVLVVLLLVL VVLFHVCVVG IVPQRRRRRR CAKKDVSMDG RQAVCRSAGG  60
EGGGQRAGQS PSRGSRAVER SEYPHLPPHL QPLPDTSNEE EDNRRSRAVP LGSGSTQEWT  120
STELCGSREP SYGHGRLSSS TRTVLVDNRP DDDGAQVTAV ARSSKSPASS VRVASGNNRD  180
PRTQQYRASS ASRGASARPS WMLSPSPLSG NSSAARNRGE CGEHDCGIEE RGDRRDGREV  240
WEEQRRMLHP RRQESITRGV QRLRVVDDEN DGDTPDVGGN DQDLNDDDCG GGEDDAGQVS  300
PSKQSSMGGK GGRVKVSVRN GRRGKKAMGK GSVVEADGDA EGDRHFWSID DMVALIRAKR  360
DQGAHLQGMG TAYARMKPRE LKWLDVEQRL KKVGVEREAE RCGKKWDNLM QQFKKVHRFQ  420
GLSGKQDFFQ FTGKERLSKG FSFNMDHTGA PGGVRLPSAN SGDPESVGDR GAAVGLDDDG  480
DGSTRGSSQT TGGPTGFGKR KSTRQQTFDA LSECMEKHGA LVVSTMESNS KRKCSIQIRQ  540
CEALEAEVEV QKKHYAASDK VSKLMCHALL EIAKAIREHV PSPSTPSSDC ANVFPCAFVA  600
FFAVIICVFD TDVPHSNLVA FVTICAVTLS KDFDVVLYSL IIATLLGGET GRHSSHHPCV  660
SWRVCRAPWH PEVLDAGGLP GNRRSTRLSG IKGAATWRTN RESSSKGPLR YVESDFAESE  720
EIPMKRKSSR RQTGALRIDD VGERHSAGGR GANEQDVNVA ARLATGRAGG SAAMQQNRAP  780
LPRVSEPPAA QEVFVRGRTP STPRQTTATK VGVAAQGIGQ GIASRSPAHD ERGASTAVAA  840
RATEMAKAGA ATAGGASQAA EGGRSVGAAT VGASHAVEGA RAGGGNAGEG SRAGAVAGVG  900
EDDEALANRV RQRSAREGID VASKLWVDDI HFWNGTEGNA IVKLIAYIED RHEDDEQAAY  960
QEASVQRLVG AFTSAVSTAE GVDGGRVSHE RLKSVAEAMQ VMLAATMWLM RMGGGDRRAH  1020
YNTWVFVQLT AKPTLIASMH RSFDARRHIV QAATAITDKL AKPPITLLAP PLYIPDWVSI  1080
GVKFLARRHF VFPNGGSKAP LVGHRATGRR R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	40	QRRRRRR
2	35	40	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-08	Trihelix family protein