PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG73116.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 528aa MW: 57785.2 Da PI: 6.7945

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG73116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.4	2.1e-09	273	347	2	68
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikege 68 Wt ++ +Li+a+r+ +++l r k k +W++ k++ + g+ +r+ + C++kw+nl +++k + + + GBG73116.1 273 WTVEHMIVLIRAKRDQDSHLAglayttgRMKTKTWKWDDAEKRLVHMGVtSRKVVDCEKKWDNLYQQFKTVHKFM 347 ************9999998666654456899999****99999799***************998755 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MTTLSVGAAV SSRQRCRSAK AVRRPYDPAL YSHLPSHEIP LPPSDDDGDD PRCSTLPLGS 60 GPTQDWMGSQ LYRQASTPTY TDLLEGRTPA GYDAGLADLS FGLRSRSAEE VMRTVIVNPA 120 SGTTHTPAPV TTRTGGSVPC RTTTAGGTVD GRRPNDEWSA TEVIGRKVWD DHRRQSREAS 180 TPGITRGVAK INVGADDILG DEDGAVAEDC EADDGADNDD EEDNEEMEIR PVGRKQGGSR 240 ATKKLPETRT GRRGKKGVED ASAGEGSKSR HFWTVEHMIV LIRAKRDQDS HLAGLAYTTG 300 RMKTKTWKWD DAEKRLVHMG VTSRKVVDCE KKWDNLYQQF KTVHKFMGEL GKPNFFTLTP 360 GERKERGFDF RMDERVYSEM AAMTRSDHTI HPTNLVDTGA TGGVQMPGPR GGRNESGGSE 420 GGGDGHDDDL GSTRDSISGG GVGGGSKRKN VRQQTFDTIV DVMKEHGSLM ATTVDNASKR 480 HCSILTRQCD ILEQEVEVQK EHYVKADQAN FMMCNALMKI AKAIRERS

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MTTLSVGAAV SSRQRCRSAK AVRRPYDPAL YSHLPSHEIP LPPSDDDGDD PRCSTLPLGS  60
GPTQDWMGSQ LYRQASTPTY TDLLEGRTPA GYDAGLADLS FGLRSRSAEE VMRTVIVNPA  120
SGTTHTPAPV TTRTGGSVPC RTTTAGGTVD GRRPNDEWSA TEVIGRKVWD DHRRQSREAS  180
TPGITRGVAK INVGADDILG DEDGAVAEDC EADDGADNDD EEDNEEMEIR PVGRKQGGSR  240
ATKKLPETRT GRRGKKGVED ASAGEGSKSR HFWTVEHMIV LIRAKRDQDS HLAGLAYTTG  300
RMKTKTWKWD DAEKRLVHMG VTSRKVVDCE KKWDNLYQQF KTVHKFMGEL GKPNFFTLTP  360
GERKERGFDF RMDERVYSEM AAMTRSDHTI HPTNLVDTGA TGGVQMPGPR GGRNESGGSE  420
GGGDGHDDDL GSTRDSISGG GVGGGSKRKN VRQQTFDTIV DVMKEHGSLM ATTVDNASKR  480
HCSILTRQCD ILEQEVEVQK EHYVKADQAN FMMCNALMKI AKAIRERS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-06	Trihelix family protein