PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG72975.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 862aa MW: 93527.1 Da PI: 7.1296

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG72975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.7	1.1e-11	363	434	2	66
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+ +++ aLi a+r+ + +l+ r k ++ +W +v+++++ g+ r+ ++C +kw+nl +++kk+ + GBG72975.1 363 WSVEHIIALIWAKRDQDAHLQgmghayaRMKPREWKWNDVARRLKNVGVDRKLEKCGKKWDNLMQQFKKVHH 434 ************7766666433333367899**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MADIFRKLPL LLLAVFLLVV VVVLHVCFIG NAPRRRRRRT SPMKAVRTDS GQGSPRGGGE 60 QVVSGRVARS SSPACRLSLG VGNSSLPPHL QPLPDSSDEE EREGRARTVP LGSGSTQEWS 120 WTELFGGSGG VHGQSCTELL APGLDGEEGH GGSNLSSGLS TGRCESQSRT VIVNPHVGDG 180 GGKLTDVDRS SKSAGAQKWQ GRATSISRST QGRRSFMQSP ALVSAASNLG RRRGIVEEGG 240 GYLDDVVDDH DGRLVWAEER RKIREGREEA IRRGVERLRM DRQAEEVEEP HAGLPSEDDD 300 DDGAGEAGDG NGGYASPSQN SDGGGKGGKT KATSGNGRGP KKAQAKANDG EGDGDPEEKR 360 NSWSVEHIIA LIWAKRDQDA HLQGMGHAYA RMKPREWKWN DVARRLKNVG VDRKLEKCGK 420 KWDNLMQQFK KVHHFQSPSG GIDFFQLNGK ERARHDFNFN MDRAVYDEIE GSSGFNETIY 480 PKNVADTGAR GGVRLPSTTT ADPEAIGDAD ACAGGEDEDE GSTRGSSQTS GSPHGFGKRK 540 STRQQTFEAM TECMDKHGAL MAATMESASK RQCSIQLRQC EALEAEVQVQ KTHYAAFDET 600 PSSKRSEQAV GVASSSQAVA DPSTMRSPAS QPPGGAVQGA SAMADVAKAG DGGAEGEDDE 660 PLVKKLRGQR PEAKVMEVAA RLWTDDIRSI PQKKIEDASE LRAAKERALK VESIAKRAIH 720 GWIFKSDSRH KGYHLAYQYA LNHVATDMAR AMWALEDWRS LVSPMAIRNM LELGMKLPLW 780 FVGANVVDRH QHNECAAYQE AISQSFVRDF TNVVEVAQAM DSGRVSYERL KSLAEAMRYL 840 LAAAAAWIMR MAGDDARSHF DA

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MADIFRKLPL LLLAVFLLVV VVVLHVCFIG NAPRRRRRRT SPMKAVRTDS GQGSPRGGGE  60
QVVSGRVARS SSPACRLSLG VGNSSLPPHL QPLPDSSDEE EREGRARTVP LGSGSTQEWS  120
WTELFGGSGG VHGQSCTELL APGLDGEEGH GGSNLSSGLS TGRCESQSRT VIVNPHVGDG  180
GGKLTDVDRS SKSAGAQKWQ GRATSISRST QGRRSFMQSP ALVSAASNLG RRRGIVEEGG  240
GYLDDVVDDH DGRLVWAEER RKIREGREEA IRRGVERLRM DRQAEEVEEP HAGLPSEDDD  300
DDGAGEAGDG NGGYASPSQN SDGGGKGGKT KATSGNGRGP KKAQAKANDG EGDGDPEEKR  360
NSWSVEHIIA LIWAKRDQDA HLQGMGHAYA RMKPREWKWN DVARRLKNVG VDRKLEKCGK  420
KWDNLMQQFK KVHHFQSPSG GIDFFQLNGK ERARHDFNFN MDRAVYDEIE GSSGFNETIY  480
PKNVADTGAR GGVRLPSTTT ADPEAIGDAD ACAGGEDEDE GSTRGSSQTS GSPHGFGKRK  540
STRQQTFEAM TECMDKHGAL MAATMESASK RQCSIQLRQC EALEAEVQVQ KTHYAAFDET  600
PSSKRSEQAV GVASSSQAVA DPSTMRSPAS QPPGGAVQGA SAMADVAKAG DGGAEGEDDE  660
PLVKKLRGQR PEAKVMEVAA RLWTDDIRSI PQKKIEDASE LRAAKERALK VESIAKRAIH  720
GWIFKSDSRH KGYHLAYQYA LNHVATDMAR AMWALEDWRS LVSPMAIRNM LELGMKLPLW  780
FVGANVVDRH QHNECAAYQE AISQSFVRDF TNVVEVAQAM DSGRVSYERL KSLAEAMRYL  840
LAAAAAWIMR MAGDDARSHF DA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	39	RRRRRR
2	34	40	RRRRRRT
3	35	41	RRRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein