PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG71724.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB_related

Protein Properties

Length: 1269aa MW: 127291 Da PI: 9.699

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG71724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.6e-10	121	165	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r+ WTteEde l+ av++ G g+W+ I + + Rt+ q+ rw GBG71724.1 121 RKLWTTEEDEALLAAVEKCGEGNWTNILKGAFtLERTAAQLSQRW 165 567***************************999*******999 PP

Sequence ? help Back to Top
Protein Sequence Length: 1269 aa Download sequence
MILGCITDWT PVALGLCISD IAAGRHGGQD AMPAGRVENG ATGKPPAGAG VSASANFAKP 60 AGVGCSAGST STGVDPAVSS ADAKISGGTK RPHEGSIGCA GQPAGSDKKV TAMGPPERRK 120 RKLWTTEEDE ALLAAVEKCG EGNWTNILKG AFTLERTAAQ LSQRWALIRK RKDLLAAAKA 180 RRVASSAVIP NPTPPITTTP ATDAALASLK SESVCATTGH GRGNGIQVDS GPQDRTPGRC 240 TMMACALSST SALVSQTGAS IPASTLCSRT SLAEATRSSD LPVLAGKLEM PSGGAMSMTN 300 AAEQTVQSQT LPACGTLSAM SGAASNLSAS AAHAGHAIGT PTDGTAQGMV APAPPSAAAG 360 VRTPMVVGVS ASSSWGWQNT PMHAPGGAVL GTQGRGGGHY SSSQPSQPAQ PLSTGVSMPS 420 MAVGVGVGMP YQMGMGGSIV SPAGKPAITD ASDVRNRTPN LASCLQGQPA LSGMTTAATG 480 KEGGRGRGSG SGGKGNGSTS AGRLPAGGRV VAPGVMVMSA AAAQAASVGG SEMWSAAAIA 540 AGRGVGKVNA GVSTSSYTAN DVSAGSTIGP AASTMGPAAS ATASAGNAPG RRQGAGRGST 600 ADQSVQVVPV AAAAAGSRTA SPSQAVRIVK SQQPTAGKGV LVGATSGTVM HPASGSGSLT 660 GVPSAITPVS GMARGSVSAS GRGASRGSSG SGHAPQQPSQ PGIPIKPVQQ TVHLQNQHSA 720 GGLTALPVSL APQLPQQSIL STQHPSPPQQ LDAMPPQPPP TPMRQLAHVA QQKPSQVAQP 780 MGPPPHHPPP APNLPTPSFP QPQPSLQQPA SLPCPPLHVV PSVKSPPGPL QTQPQVMHVN 840 PLSAATLANK DSKLPPSLHQ PSSQQVQPSP LPCPSAAALV NTESQLLSSL HQPSGVGQEQ 900 VKNQSGNHLA GLGGAQGQTK SSASTAVHNN TVTEAAVNQT ASSMGSGEPS AELVRNSGAG 960 KVPPTLLHNT KGQQSSETAS FIQASGNCSG PSSPPSLHPL PSLRTPIICS PPPHPPPPPP 1020 PPSSPMGHAP ASAPVPYALS CDHRLQGHTK QSPQDRVCPA VLSPPAAPVA PNMSSANMLL 1080 PQLAHGREDH AEPQHQTGKC FSEPRLSRET SSHPSEIGHQ GSLNRGIVGS MPYAMKGSRS 1140 ESQTEGMRNS SGQERVPQSG GERNDVSDFG LSNIGEPFSL PGEKPVLPAP GPSGREIRPE 1200 PTWRQQRSDD SSVADVLLPV ALTNLGEGRL LLSDQKQLAR NAQNSPMFGP ACTELPSAKD 1260 VDRKISEND

Sequence ? help Back to Top

Protein Sequence Length: 1269 aa Download sequence

MILGCITDWT PVALGLCISD IAAGRHGGQD AMPAGRVENG ATGKPPAGAG VSASANFAKP  60
AGVGCSAGST STGVDPAVSS ADAKISGGTK RPHEGSIGCA GQPAGSDKKV TAMGPPERRK  120
RKLWTTEEDE ALLAAVEKCG EGNWTNILKG AFTLERTAAQ LSQRWALIRK RKDLLAAAKA  180
RRVASSAVIP NPTPPITTTP ATDAALASLK SESVCATTGH GRGNGIQVDS GPQDRTPGRC  240
TMMACALSST SALVSQTGAS IPASTLCSRT SLAEATRSSD LPVLAGKLEM PSGGAMSMTN  300
AAEQTVQSQT LPACGTLSAM SGAASNLSAS AAHAGHAIGT PTDGTAQGMV APAPPSAAAG  360
VRTPMVVGVS ASSSWGWQNT PMHAPGGAVL GTQGRGGGHY SSSQPSQPAQ PLSTGVSMPS  420
MAVGVGVGMP YQMGMGGSIV SPAGKPAITD ASDVRNRTPN LASCLQGQPA LSGMTTAATG  480
KEGGRGRGSG SGGKGNGSTS AGRLPAGGRV VAPGVMVMSA AAAQAASVGG SEMWSAAAIA  540
AGRGVGKVNA GVSTSSYTAN DVSAGSTIGP AASTMGPAAS ATASAGNAPG RRQGAGRGST  600
ADQSVQVVPV AAAAAGSRTA SPSQAVRIVK SQQPTAGKGV LVGATSGTVM HPASGSGSLT  660
GVPSAITPVS GMARGSVSAS GRGASRGSSG SGHAPQQPSQ PGIPIKPVQQ TVHLQNQHSA  720
GGLTALPVSL APQLPQQSIL STQHPSPPQQ LDAMPPQPPP TPMRQLAHVA QQKPSQVAQP  780
MGPPPHHPPP APNLPTPSFP QPQPSLQQPA SLPCPPLHVV PSVKSPPGPL QTQPQVMHVN  840
PLSAATLANK DSKLPPSLHQ PSSQQVQPSP LPCPSAAALV NTESQLLSSL HQPSGVGQEQ  900
VKNQSGNHLA GLGGAQGQTK SSASTAVHNN TVTEAAVNQT ASSMGSGEPS AELVRNSGAG  960
KVPPTLLHNT KGQQSSETAS FIQASGNCSG PSSPPSLHPL PSLRTPIICS PPPHPPPPPP  1020
PPSSPMGHAP ASAPVPYALS CDHRLQGHTK QSPQDRVCPA VLSPPAAPVA PNMSSANMLL  1080
PQLAHGREDH AEPQHQTGKC FSEPRLSRET SSHPSEIGHQ GSLNRGIVGS MPYAMKGSRS  1140
ESQTEGMRNS SGQERVPQSG GERNDVSDFG LSNIGEPFSL PGEKPVLPAP GPSGREIRPE  1200
PTWRQQRSDD SSVADVLLPV ALTNLGEGRL LLSDQKQLAR NAQNSPMFGP ACTELPSAKD  1260
VDRKISEND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	123	ERRKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-17	MYB_related family protein