PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG71685.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family C3H
Protein Properties Length: 313aa    MW: 37311.2 Da    PI: 9.5141
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG71685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.1e-091438226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                ++++C+f+++ G C++GdrC++ H 
  GBG71685.1 14 DRVNCPFYFKIGACRHGDRCSRLHN 38
                6899********************7 PP
2zf-CCCH17.48.2e-06153176226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ Cr + +   C++G+ C+F+H 
  GBG71685.1 153 REATCRQHEE-NNCNRGGYCNFMHL 176
                 6788**7777.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP NASQTLLFAN MYQSPDANIQ  60
TGMDQHGNVQ QMDPRKVQEH FEDFYEDVFE ELCNYGELEC LHVCDNLADH MIGNVYCKFR  120
EEEQAAAALR ALSGRYYAGR PIIVDFSPVT DFREATCRQH EENNCNRGGY CNFMHLKRIG  180
RDLRRKLFGR FKRSRSRSPS PYGRDSDHGS PRRRYYDDRQ FEERRDYRDR PWDRDRGGRG  240
RYYNRDDRYR DERNRSRKRE RSRSYTPDRR RRERSPTREG SAERRAKIEQ WNREREQAAA  300
SVGNGGNGVY QQR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197KRSRSR
2253263RNRSRKRERSR
3257272RKRERSRSYTPDRRRR
4268273DRRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.14e-29C3H family protein