PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG71537.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 954aa MW: 102532 Da PI: 10.3402

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG71537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28	5.7e-09	353	429	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r ++++++r k k +W++v k++ + g+ r+ + C +kw+nl +++k + + +++ GBG71537.1 353 WTVEHMIALIRAKRdqdlhlaGLGHNYGRMKTKTWKWDDVEKRLVQMGVtGRKVVDCGKKWDNLYQQFKSVHKFMGE 429 ************66666666667777899**********9999679***************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence
MADLYRRLPL LLLVALLLLI VVVFHICFLG RVPGRKQMRR TPKKSSKMDK LQTKTTMSVE 60 GGGSSCQRCN SAEGGRRPYD PTLYRHLSSH EIPSPPSDDD VDDPRSSTVP LGSGSTQDWM 120 GSQLYRHAST PTYIDLLEGR TPAGYDAGLV DLNFGLRFGS GEDLTHTVVV NPASATKHTS 180 PSVRAAGPVD SRGFVLPRRV ALSTASVAAS RTKTAGLAGC RTTTPGGIID REGDDDERAT 240 TKVVGRQFWD DERQRLRSAN TSSIMRGVAR INVGAENVFV DCDGGGGEEI AVDDGGDDNE 300 EDDNDEMEIR PVGRKRGGSR ATTKVRESCT GRKGKKCAEE SSAGDGTKSR DFWTVEHMIA 360 LIRAKRDQDL HLAGLGHNYG RMKTKTWKWD DVEKRLVQMG VTGRKVVDCG KKWDNLYQQF 420 KSVHKFMGES GKPNFFTLTP GERRERGFDF RMDERVYSEM KTNLKDTGAP GGVQMPGALG 480 GRNKSGGSDG GGDGQDDDHG STRHSSLSGG GGGGAGKRKN GRAVVDGQAC PWCAARPRTV 540 QKGIPGGIPY RCHSIAKAPK APSVHGLVVA RPVIRFDATI DGFGLCGHPR PPASTSAKRR 600 VIGVLLRPQQ RSAASSTSSV GKVPVIELPP LLHSRHPRGG LLDRSTLRSA GLGSAGIHVL 660 LHPHQPSVAS SECSFVHSGE APHHQRRPSA RCPSSSSHRS FIRVIHVADC WTDPRYDRRV 720 WAPRASTSSC IHVSQASRHR SAPSSTAAKR RIINVVHRQG KLKRNSGSDD GGESQKGRGH 780 VPKSKRQHFD DESSEHTADF QAEEVSMVDA QGPDVMKRLG IGRDGVSRGQ LAALKQGLVG 840 GVAVTLARTP KAAGIVMTDA RVARQVPPMV GHGKPRQPLP AQQAGASGVE KTPSAQKVDT 900 TVGGSRTEAA DNTTGSGVAE AAEEGRVDDV RRDDGRKDAG GGVMMTTTVR FQRW

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence

MADLYRRLPL LLLVALLLLI VVVFHICFLG RVPGRKQMRR TPKKSSKMDK LQTKTTMSVE  60
GGGSSCQRCN SAEGGRRPYD PTLYRHLSSH EIPSPPSDDD VDDPRSSTVP LGSGSTQDWM  120
GSQLYRHAST PTYIDLLEGR TPAGYDAGLV DLNFGLRFGS GEDLTHTVVV NPASATKHTS  180
PSVRAAGPVD SRGFVLPRRV ALSTASVAAS RTKTAGLAGC RTTTPGGIID REGDDDERAT  240
TKVVGRQFWD DERQRLRSAN TSSIMRGVAR INVGAENVFV DCDGGGGEEI AVDDGGDDNE  300
EDDNDEMEIR PVGRKRGGSR ATTKVRESCT GRKGKKCAEE SSAGDGTKSR DFWTVEHMIA  360
LIRAKRDQDL HLAGLGHNYG RMKTKTWKWD DVEKRLVQMG VTGRKVVDCG KKWDNLYQQF  420
KSVHKFMGES GKPNFFTLTP GERRERGFDF RMDERVYSEM KTNLKDTGAP GGVQMPGALG  480
GRNKSGGSDG GGDGQDDDHG STRHSSLSGG GGGGAGKRKN GRAVVDGQAC PWCAARPRTV  540
QKGIPGGIPY RCHSIAKAPK APSVHGLVVA RPVIRFDATI DGFGLCGHPR PPASTSAKRR  600
VIGVLLRPQQ RSAASSTSSV GKVPVIELPP LLHSRHPRGG LLDRSTLRSA GLGSAGIHVL  660
LHPHQPSVAS SECSFVHSGE APHHQRRPSA RCPSSSSHRS FIRVIHVADC WTDPRYDRRV  720
WAPRASTSSC IHVSQASRHR SAPSSTAAKR RIINVVHRQG KLKRNSGSDD GGESQKGRGH  780
VPKSKRQHFD DESSEHTADF QAEEVSMVDA QGPDVMKRLG IGRDGVSRGQ LAALKQGLVG  840
GVAVTLARTP KAAGIVMTDA RVARQVPPMV GHGKPRQPLP AQQAGASGVE KTPSAQKVDT  900
TVGGSRTEAA DNTTGSGVAE AAEEGRVDDV RRDDGRKDAG GGVMMTTTVR FQRW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	45	RRTPKKS