PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG71318.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family C3H
Protein Properties Length: 388aa    MW: 40817.8 Da    PI: 4.665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG71318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-09228253127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt lC ++++  tC++G+ Ck+aHg+
  GBG71318.1 228 FKTTLCGYYRK-STCRHGAECKYAHGE 253
                 69*****9999.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MKRVHSDSLP ASPDPGADGV IKEDEDAELA RPRKMTKPNL ADGGEDAEME QDVEARSVGM  60
MVGDDNDPTT AQQGEDGDRE GETKEADVAT MDAHVEGKGT IISGGTVVEE GEEVVSPAKA  120
AQPTITAAAA ADGIERERGR VASSSDAAPA EGNGEMSYDQ STNGVRSITS AAAMTLAPGA  180
PSTSRMGEGE RNCDPTGGGG VAPALAPPPG PSTTSPSPSP SPSPSPFFKT TLCGYYRKST  240
CRHGAECKYA HGEEELRPRP DGTYDPNSVK GGGVGGKKAR GGKNAKWEQQ EAEETFAGDK  300
DKGVTMQQLL ESEERAERVQ GTRNGDLLHV CVLHLPPWWQ TADLRKHLDE LNVKYKTAKK  360
RKGDRVGFLG FASDSELSEA QQRLSGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.21e-24C3H family protein