PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG71252.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 898aa MW: 98134 Da PI: 7.1658

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG71252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.4	2e-09	203	279	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ aLi+a+r+ +++l r k k +W++v k++ + g+ +r+ + C +kw+nl +++k + + +++ GBG71252.1 203 WTVEHMIALIRAKRDQDSHLVglahttgRMKTKTWKWDDVEKRLVHMGVtSRKVVDCGKKWDNLYQQFKTVHKFMGE 279 ************777766644443336789999*****99999799***************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence
MGSQLHRQAS TTTYSDLLEG RAPAGYDAGL VDLSFGLRSG SAEEATRTVI VNPALGTTHT 60 PPQVTTRTGR SVPCRTTTAG GTVDGRRPNE EWSATXVVGR KFWDDHRRQS REASTAGITR 120 GVAKISVGAD DILRDEDGGV AEDCEADDGA GNDDEDMEIR PLGRKRGGLT AAKKLPEMRT 180 GRRGKKGVED ASPDEGSKSR DFWTVEHMIA LIRAKRDQDS HLVGLAHTTG RMKTKTWKWD 240 DVEKRLVHMG VTSRKVVDCG KKWDNLYQQF KTVHKFMGES GKPNFFTLTP GERKERGLDF 300 RMDECVYSKM AAMTTSDHTI HPTNLADTGA TGGVQMSAPR GGRNESGGSE GSGDGQDDDQ 360 GSTKDSISGG GVGGGSKRKN VRQQTFDMIA DVMKEHGSLI ASTVDCASKG QCSILTRQCD 420 ILEREVEVQK EHYFKADQAN LMMCEALMEI AKAIRKRSKD GGVGDGGETN KGRGHIPKSK 480 RQRIDDASSS QTEDFLADEV AMVDAQGTTG VVRLGFGRDG VSREQLQAAR RSVVGGAAGT 540 VPRSPNTARV VVTAARVAGQ ISAAAGQDGK REGNDGDDRP LVSRGKGAPK EDELQEKAKL 600 WVDCDAFWGE GPVKPLREAV GECTDYFVTV ANGDARAEPP SMLIMPPNDV PRFKIDDPAQ 660 REPALRRARS VERVVLRTIH GWIFKSQSRW TGFSRAESYI TVDFAMDLAR AVWQALEWSR 720 VVSPALVYHT VAMKMDVPLW FAGLKIEDRP EDDNMAARQE ATVLLLAECW TDALWCGQWA 780 DDGRVKQDRL SRLADCLRAL LCAVMWIMRM GGDDNRSHYE AWSYASMVAK PTMIGAGSYI 840 FNWRQHVVDS ANLVLHRLGK AHLTLGDYPQ CIPEWCDCGL AFGHNAALKN AAEAAKHG

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence

MGSQLHRQAS TTTYSDLLEG RAPAGYDAGL VDLSFGLRSG SAEEATRTVI VNPALGTTHT  60
PPQVTTRTGR SVPCRTTTAG GTVDGRRPNE EWSATXVVGR KFWDDHRRQS REASTAGITR  120
GVAKISVGAD DILRDEDGGV AEDCEADDGA GNDDEDMEIR PLGRKRGGLT AAKKLPEMRT  180
GRRGKKGVED ASPDEGSKSR DFWTVEHMIA LIRAKRDQDS HLVGLAHTTG RMKTKTWKWD  240
DVEKRLVHMG VTSRKVVDCG KKWDNLYQQF KTVHKFMGES GKPNFFTLTP GERKERGLDF  300
RMDECVYSKM AAMTTSDHTI HPTNLADTGA TGGVQMSAPR GGRNESGGSE GSGDGQDDDQ  360
GSTKDSISGG GVGGGSKRKN VRQQTFDMIA DVMKEHGSLI ASTVDCASKG QCSILTRQCD  420
ILEREVEVQK EHYFKADQAN LMMCEALMEI AKAIRKRSKD GGVGDGGETN KGRGHIPKSK  480
RQRIDDASSS QTEDFLADEV AMVDAQGTTG VVRLGFGRDG VSREQLQAAR RSVVGGAAGT  540
VPRSPNTARV VVTAARVAGQ ISAAAGQDGK REGNDGDDRP LVSRGKGAPK EDELQEKAKL  600
WVDCDAFWGE GPVKPLREAV GECTDYFVTV ANGDARAEPP SMLIMPPNDV PRFKIDDPAQ  660
REPALRRARS VERVVLRTIH GWIFKSQSRW TGFSRAESYI TVDFAMDLAR AVWQALEWSR  720
VVSPALVYHT VAMKMDVPLW FAGLKIEDRP EDDNMAARQE ATVLLLAECW TDALWCGQWA  780
DDGRVKQDRL SRLADCLRAL LCAVMWIMRM GGDDNRSHYE AWSYASMVAK PTMIGAGSYI  840
FNWRQHVVDS ANLVLHRLGK AHLTLGDYPQ CIPEWCDCGL AFGHNAALKN AAEAAKHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	478	483	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-06	Trihelix family protein