PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70430.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 540aa MW: 60244.1 Da PI: 6.9143

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.4	5.8e-11	149	227	1	71
trihelix 1 rWtkqevlaLiearremeerlrrg.......klkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkr 71 +W +e l+L+ +r++++++ ++ k k +W e++k+m+++g+ +r C ++wen+ + y+ki ++ek+ GBG70430.1 149 KWHLDELLVLVWCKRDLDDHMASQgskfarmKTKTWKWNEIAKRMAQQGVtNRDGDLCMKRWENIFGWYRKIWDSEKDT 227 7************888888754233333379999*******999899********************9984 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MQDAREDRPQ TQRPPRSSSA CTSSHSRPPA LPTPFRIGVP HTVPPGKVTT TTAAESPQVI 60 ERIIAQYSRM RTDVEHDDGG DDNTRGEDVA DEDCMDDDDE SDEDDDAAAK EVSSTAGETK 120 PSKRRGRSKA REEGGGADAE GGGGSTRQKW HLDELLVLVW CKRDLDDHMA SQGSKFARMK 180 TKTWKWNEIA KRMAQQGVTN RDGDLCMKRW ENIFGWYRKI WDSEKDTDVQ SLFLLTSKKR 240 KEQGYKFAMD RQIYDAIHAT TPNNQAIHPP NLHDTGGLPP QQPNDVDQSQ GRGPTVVGET 300 SASDNMDSGA GDGYGSRSSR GGLVGKRKNA RQLAFDAVTD VMWQIMWIAP ASVNAMCCNN 360 NAISWRGRPG RKRNSAMCLT RRGSTSSPSW IATHMEIDVA LRGRVLGRSV VFYEMRHWRG 420 NDYGRDFGFE NGVSKHDVRH YEIDADGDTC LHLTVGFGFG RGFLRQLVVF AQKVGTTIPD 480 RWSAGVDVLA EFIDLLVSNV AMGYTCRLHD LALYVVQAEP PLANREYLHS KVRVITNDFY

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MQDAREDRPQ TQRPPRSSSA CTSSHSRPPA LPTPFRIGVP HTVPPGKVTT TTAAESPQVI  60
ERIIAQYSRM RTDVEHDDGG DDNTRGEDVA DEDCMDDDDE SDEDDDAAAK EVSSTAGETK  120
PSKRRGRSKA REEGGGADAE GGGGSTRQKW HLDELLVLVW CKRDLDDHMA SQGSKFARMK  180
TKTWKWNEIA KRMAQQGVTN RDGDLCMKRW ENIFGWYRKI WDSEKDTDVQ SLFLLTSKKR  240
KEQGYKFAMD RQIYDAIHAT TPNNQAIHPP NLHDTGGLPP QQPNDVDQSQ GRGPTVVGET  300
SASDNMDSGA GDGYGSRSSR GGLVGKRKNA RQLAFDAVTD VMWQIMWIAP ASVNAMCCNN  360
NAISWRGRPG RKRNSAMCLT RRGSTSSPSW IATHMEIDVA LRGRVLGRSV VFYEMRHWRG  420
NDYGRDFGFE NGVSKHDVRH YEIDADGDTC LHLTVGFGFG RGFLRQLVVF AQKVGTTIPD  480
RWSAGVDVLA EFIDLLVSNV AMGYTCRLHD LALYVVQAEP PLANREYLHS KVRVITNDFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-07	Trihelix family protein