PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG70425.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

TCP

Protein Properties

Length: 1094aa MW: 107123 Da PI: 8.0627

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG70425.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	89.6	6.7e-28	239	390	7	89
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceaesssssa 82 +++hTkv+gR+RR+R++a ca ++F+L++ LG+++d+ tieWLlqqa pai e tg + GBG70425.1 239 VRKDRHTKVDGRGRRIRMPARCAVEIFKLTKVLGYKSDGMTIEWLLQQAAPAIMEKTGKavcmpsnsggqgdlhgasvsgsgT---------------- 321 679********************************************************664433333333333222222220................ PP TCP 83 snsssg...................................................................k 89 g GBG70425.1 322 -----GlpralvlkpdlrngslggrgmgtggcgggggalgggigmnsqgtrggggrvlssngngtvvngtghpG 390 .....133334444444444444444445555555555555555555555555555555555555555555542 PP

Sequence ? help Back to Top
Protein Sequence Length: 1094 aa Download sequence
MNVHHSGRSV EDAIALMDSG FPPLAVLDPC TAAAAAAGAG GHGHPLHHTG TGRGGNNDGH 60 SLMTTCRAPS FLQPSGTSDI IRHVTSTCGA GAKSNNGGPG DGGGGKIQLH MLRHGASLSG 120 RGHGGDMRGD DDLDRPRSHV GDRLSDVSGR LDREGSLSAN MVPGQLIRQL AAAGSASLSL 180 VSMDSLPCHG GAMTACMQRS LGAGGGGGGS GSLGGPGGSG AADSGAGGGV MGNAKKMVVR 240 KDRHTKVDGR GRRIRMPARC AVEIFKLTKV LGYKSDGMTI EWLLQQAAPA IMEKTGKAVC 300 MPSNSGGQGD LHGASVSGSG TGLPRALVLK PDLRNGSLGG RGMGTGGCGG GGGALGGGIG 360 MNSQGTRGGG GRVLSSNGNG TVVNGTGHPG DNRGSSSLQE QHHQQQCHGG QSDAMSRVNA 420 SEVEQQRLRE LKEENLDVCD LRVGVGGEGC RGSASGSGYG GPSLHSPQVS NDQSGQTSMS 480 PSQMDRSLGG GADKDWMSSG GASPPGSTHS LSAGCRSNEG TEDGEMKELL SMDGMRAEDG 540 GGERRNRSCS SRKRDSNASQ LSGDPALSTI ERISVQLSDA SPRRGGGGGG GGGGGGEQGG 600 GHHSHHQHQG HQSGLGMGSP PLKRWRTLGG AAGNSSGPTM ISLSLDRDSH HGNNGAIGRG 660 GAEGGGGGRG GGGGGSGFGS YPEVDSAAAA ASLFGNGGSH CSPGSLTSCG GQTVSSVISA 720 VSIHSQMQAV YQNAAAVAAA AAAAAGVGKA SSPAGSMGGS SGVISTMGLS SHSSPNNNNH 780 GQGGGSMGSE SPQSTPTSAA AAVAAAAAAA AAGSFTSLMF PASGGGGLSC GGRSHSGPKE 840 HSLSLGQSQQ PVSSDSRYLN SEPSSSSHNS SGLQYIPMSA GCGLSPCLVE GGAGEGEDPC 900 LGAMQLGPVT RSSWNPRPGM SMPGSSSPHH PRLPTRHFCS SVGSHTTLLP LQSGGGGGFR 960 GGPGSAHAAE MLTQMAGLWP GATGGLGAAG SRSPFHSPAA AAAAAVAAAA VANDRCMMVG 1020 SGNCGNNQGF SESDSQRLAA AVAAAAAVGA AALLEEHHQS HGRGGSGMSG RDASGGMGGV 1080 TRSFPVDSSG DGKR

Sequence ? help Back to Top

Protein Sequence Length: 1094 aa Download sequence

MNVHHSGRSV EDAIALMDSG FPPLAVLDPC TAAAAAAGAG GHGHPLHHTG TGRGGNNDGH  60
SLMTTCRAPS FLQPSGTSDI IRHVTSTCGA GAKSNNGGPG DGGGGKIQLH MLRHGASLSG  120
RGHGGDMRGD DDLDRPRSHV GDRLSDVSGR LDREGSLSAN MVPGQLIRQL AAAGSASLSL  180
VSMDSLPCHG GAMTACMQRS LGAGGGGGGS GSLGGPGGSG AADSGAGGGV MGNAKKMVVR  240
KDRHTKVDGR GRRIRMPARC AVEIFKLTKV LGYKSDGMTI EWLLQQAAPA IMEKTGKAVC  300
MPSNSGGQGD LHGASVSGSG TGLPRALVLK PDLRNGSLGG RGMGTGGCGG GGGALGGGIG  360
MNSQGTRGGG GRVLSSNGNG TVVNGTGHPG DNRGSSSLQE QHHQQQCHGG QSDAMSRVNA  420
SEVEQQRLRE LKEENLDVCD LRVGVGGEGC RGSASGSGYG GPSLHSPQVS NDQSGQTSMS  480
PSQMDRSLGG GADKDWMSSG GASPPGSTHS LSAGCRSNEG TEDGEMKELL SMDGMRAEDG  540
GGERRNRSCS SRKRDSNASQ LSGDPALSTI ERISVQLSDA SPRRGGGGGG GGGGGGEQGG  600
GHHSHHQHQG HQSGLGMGSP PLKRWRTLGG AAGNSSGPTM ISLSLDRDSH HGNNGAIGRG  660
GAEGGGGGRG GGGGGSGFGS YPEVDSAAAA ASLFGNGGSH CSPGSLTSCG GQTVSSVISA  720
VSIHSQMQAV YQNAAAVAAA AAAAAGVGKA SSPAGSMGGS SGVISTMGLS SHSSPNNNNH  780
GQGGGSMGSE SPQSTPTSAA AAVAAAAAAA AAGSFTSLMF PASGGGGLSC GGRSHSGPKE  840
HSLSLGQSQQ PVSSDSRYLN SEPSSSSHNS SGLQYIPMSA GCGLSPCLVE GGAGEGEDPC  900
LGAMQLGPVT RSSWNPRPGM SMPGSSSPHH PRLPTRHFCS SVGSHTTLLP LQSGGGGGFR  960
GGPGSAHAAE MLTQMAGLWP GATGGLGAAG SRSPFHSPAA AAAAAVAAAA VANDRCMMVG  1020
SGNCGNNQGF SESDSQRLAA AVAAAAAVGA AALLEEHHQS HGRGGSGMSG RDASGGMGGV  1080
TRSFPVDSSG DGKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	659	669	RGGAEGGGGGR
2	665	675	GGGGRGGGGGG
3	666	676	GGGGRGGGGGG
4	667	677	GGGGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	4e-23	TCP family protein