PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG68527.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-X1

Protein Properties

Length: 1290aa MW: 138688 Da PI: 8.3883

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG68527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	22.4	2.7e-07	541	559	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H+C+ lCH+GpCppCpq GBG68527.1 541 CG-HQCSLLCHPGPCPPCPQ 559 .**************8 PP
2	zf-NF-X1	22.4	2.7e-07	593	612	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H Cq++CH+G+CppC+q GBG68527.1 593 CGIHLCQSECHPGECPPCSQ 612 ******************98 PP
3	zf-NF-X1	17.7	7.9e-06	646	666	1	20
zf-NF-X1 1 CGkHkCqklCHe.GpCppCpq 20 CG+H+C + CH+ G+Cp Cp+ GBG68527.1 646 CGRHTCDAVCHPpGKCPGCPL 666 *******************95 PP
4	zf-NF-X1	23.5	1.2e-07	782	799	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+HkCq++CH+GpC pC GBG68527.1 782 CGNHKCQAPCHRGPCAPC 799 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1290 aa Download sequence
MARGDNQRRQ GSPSPSPSPA PVPSSAASHS SSSGGYGGRR RDVTNGQLGR SNSGSRSAWA 60 TSPAERSGDR SSNSSSWRRP PPPPPDVQSQ ASATGGQDPP AAVVGGGGWS SRQSQSSCHP 120 SGGSNGRAWA RRAAADVQAE ASSSPAGLPA QQAPVGGGGG GGGVGGGVGG GHQRQSRPPN 180 HRRSQSSSWA SRSRSAERNS DPNTPHQTLR NPSSNPRSSS IRRSFSGYPS LGGSQEAQED 240 GEQHGRDDSR ERTGQQQRRQ NPSPAPVLPS WNPPVSRSAG KSGDVIDSAS LSSSGRDSSS 300 SAESGDDGRI GDEEANATNG GGEGGGGGGG GRGKKKRGRK LVDTAGIEHA IFQGYRQRQL 360 TPTLSRRWAD VDDEEDEEEE EEEGEEVIQE FASGSLEKIR DYLIASQSGA TSCLICLGKI 420 RVSDSVWDCK KGCYCIFHLQ CIQTWARQSS AASAARAVAN ASAGLVAESE APSAPATTVS 480 WHCPKCRSEF SQSEIPREYR CFCGKERDPP VSGWIAPHSC GERCELPLRS TCSSSSLAVE 540 CGHQCSLLCH PGPCPPCPQL LLFRCYCGAR AELKRCGHRQ WSCRGRCSKP LECGIHLCQS 600 ECHPGECPPC SQAGEYTCRC GGVSESRTCA ERDFQCEKLC GKRLPCGRHT CDAVCHPPGK 660 CPGCPLSSGK RVCPCGKVEF KDLTCDVPTP TCGATCEKLL PCGRHRCPER CHVGPCIDLC 720 RAVVSKQCRC GGQWRDVPCH QEFHCDRKCM RARNCVRHPC KRRCCDGNCP PCADVCGRKL 780 MCGNHKCQAP CHRGPCAPCM VTVRVACACG ATAFNVPCGA EKDQKPPRCR KMCAIQPLCR 840 HQDKLKPHRC HYGPCPPCGL RCEEKLPCSH LCQQICHGPR PPPNPDYTWR PKSKKQLARE 900 LEMSKRVLKE GDPCPPCSEL VIVTCLGQHQ ARLMPCVTAA SHQCQELCGN PLPCGHHTCQ 960 KLCHVVTVMR GPRPLPASVV AGAVTGGQRC TLPEGDVDVS SKQVQDSCES CIRPCEQERQ 1020 GPPCPHPCGR LCHPEPCAPC AVPLKKLCHC GMRIMILACH LFKTATEVQL RSLLCCGDFC 1080 HKRLPFCSHL CPELCHPGPC PKATECHKKV TVRCACRRLK KEMVCSDAQA AVKGDQKTLA 1140 GQGGLGKEAG TGDGNLIIVA SGITLLDCDE ECKRLLKEKE EMEAEAELRR RKARALEEDS 1200 LANLVGAGAG QRRRKGRGRG GQTSGSSSAR LWQTVLSLGL VRKATRVILI LLILLLIYSL 1260 FLCLSWLSDL MNERDKVTPR KRPPGYHFFS

Sequence ? help Back to Top

Protein Sequence Length: 1290 aa Download sequence

MARGDNQRRQ GSPSPSPSPA PVPSSAASHS SSSGGYGGRR RDVTNGQLGR SNSGSRSAWA  60
TSPAERSGDR SSNSSSWRRP PPPPPDVQSQ ASATGGQDPP AAVVGGGGWS SRQSQSSCHP  120
SGGSNGRAWA RRAAADVQAE ASSSPAGLPA QQAPVGGGGG GGGVGGGVGG GHQRQSRPPN  180
HRRSQSSSWA SRSRSAERNS DPNTPHQTLR NPSSNPRSSS IRRSFSGYPS LGGSQEAQED  240
GEQHGRDDSR ERTGQQQRRQ NPSPAPVLPS WNPPVSRSAG KSGDVIDSAS LSSSGRDSSS  300
SAESGDDGRI GDEEANATNG GGEGGGGGGG GRGKKKRGRK LVDTAGIEHA IFQGYRQRQL  360
TPTLSRRWAD VDDEEDEEEE EEEGEEVIQE FASGSLEKIR DYLIASQSGA TSCLICLGKI  420
RVSDSVWDCK KGCYCIFHLQ CIQTWARQSS AASAARAVAN ASAGLVAESE APSAPATTVS  480
WHCPKCRSEF SQSEIPREYR CFCGKERDPP VSGWIAPHSC GERCELPLRS TCSSSSLAVE  540
CGHQCSLLCH PGPCPPCPQL LLFRCYCGAR AELKRCGHRQ WSCRGRCSKP LECGIHLCQS  600
ECHPGECPPC SQAGEYTCRC GGVSESRTCA ERDFQCEKLC GKRLPCGRHT CDAVCHPPGK  660
CPGCPLSSGK RVCPCGKVEF KDLTCDVPTP TCGATCEKLL PCGRHRCPER CHVGPCIDLC  720
RAVVSKQCRC GGQWRDVPCH QEFHCDRKCM RARNCVRHPC KRRCCDGNCP PCADVCGRKL  780
MCGNHKCQAP CHRGPCAPCM VTVRVACACG ATAFNVPCGA EKDQKPPRCR KMCAIQPLCR  840
HQDKLKPHRC HYGPCPPCGL RCEEKLPCSH LCQQICHGPR PPPNPDYTWR PKSKKQLARE  900
LEMSKRVLKE GDPCPPCSEL VIVTCLGQHQ ARLMPCVTAA SHQCQELCGN PLPCGHHTCQ  960
KLCHVVTVMR GPRPLPASVV AGAVTGGQRC TLPEGDVDVS SKQVQDSCES CIRPCEQERQ  1020
GPPCPHPCGR LCHPEPCAPC AVPLKKLCHC GMRIMILACH LFKTATEVQL RSLLCCGDFC  1080
HKRLPFCSHL CPELCHPGPC PKATECHKKV TVRCACRRLK KEMVCSDAQA AVKGDQKTLA  1140
GQGGLGKEAG TGDGNLIIVA SGITLLDCDE ECKRLLKEKE EMEAEAELRR RKARALEEDS  1200
LANLVGAGAG QRRRKGRGRG GQTSGSSSAR LWQTVLSLGL VRKATRVILI LLILLLIYSL  1260
FLCLSWLSDL MNERDKVTPR KRPPGYHFFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein