PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG67234.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C3H

Protein Properties

Length: 823aa MW: 86829.6 Da PI: 8.0535

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG67234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	346	366	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd+C +aHg GBG67234.1 346 PCPDFRK-GSCRRGDSCEYAHG 366 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence
MGDHGLEVGS RKPLSPGASI EKAGSRENSR ISLLELAANN DLDGFRHAVE VEGAQVDELG 60 SWYGRQNGTN QMVLEQRTPS MIAALYGSVD VLSYILSFFD ACGCDINRKC GVDGSTALHC 120 AAAGGTPRAV ETVALLLRCG ADRDSLDNHG RRAVDVVFTP KMPHIKAHLD RLLRPDSSSP 180 SSSSSSSSSS SAAISVPSSS SLSRQSLSPA GLNSSTSSSF HDNSTAAVAV ASLPFSSVSS 240 PPTPNGCDVT RGKPSFLQLS SNGSASSSDS AHLMGGGSLS NGGSSDGSLP DVKSSIYATD 300 EFRMYSFKVK SCSRAYSHDW TECPFVHPGE NARRRDPRRY HYSCVPCPDF RKGSCRRGDS 360 CEYAHGVFEC WLHPAQYRTR LCKEGLKCTR RVCFFAHTSE ELRPLYTTSG SATLPSPRCT 420 SPIDMRSLSP PLPPPSPQSV LFPYSPATSP SGLPTPPLSP STSSSLSVWS PNVQSSVPTL 480 HLPTGLHAAR VRGLQAAQAQ AQAAAAAKVR ADGHRSSAGL EPDADRLVDL AALSISRASP 540 VPSVSSPSSS SALTARIGHA LHANFPNVAG GLQMSNASLD SLISSAAAAE SAGALGGSSA 600 AAALQSVLQS RQQQQQQQHA HQHQWRLNGS VSPLSSPIRR SVSARYSSSE RDQSLIALSP 660 SLAAAVLNRK HSFSGHEKYL DSQWRVSANG GPATTTAESS FLNLGGCSAS SMMTSSTTSS 720 GVDLSDWGSP TGKLDWGVSN EQFARFRKST SYLPSLSSRA SSLLFDEPIP DLTWVQKLVR 780 ETAGEATADC AASAALECLP RESSMERIMA GRWVDPLLQE RVA

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence

MGDHGLEVGS RKPLSPGASI EKAGSRENSR ISLLELAANN DLDGFRHAVE VEGAQVDELG  60
SWYGRQNGTN QMVLEQRTPS MIAALYGSVD VLSYILSFFD ACGCDINRKC GVDGSTALHC  120
AAAGGTPRAV ETVALLLRCG ADRDSLDNHG RRAVDVVFTP KMPHIKAHLD RLLRPDSSSP  180
SSSSSSSSSS SAAISVPSSS SLSRQSLSPA GLNSSTSSSF HDNSTAAVAV ASLPFSSVSS  240
PPTPNGCDVT RGKPSFLQLS SNGSASSSDS AHLMGGGSLS NGGSSDGSLP DVKSSIYATD  300
EFRMYSFKVK SCSRAYSHDW TECPFVHPGE NARRRDPRRY HYSCVPCPDF RKGSCRRGDS  360
CEYAHGVFEC WLHPAQYRTR LCKEGLKCTR RVCFFAHTSE ELRPLYTTSG SATLPSPRCT  420
SPIDMRSLSP PLPPPSPQSV LFPYSPATSP SGLPTPPLSP STSSSLSVWS PNVQSSVPTL  480
HLPTGLHAAR VRGLQAAQAQ AQAAAAAKVR ADGHRSSAGL EPDADRLVDL AALSISRASP  540
VPSVSSPSSS SALTARIGHA LHANFPNVAG GLQMSNASLD SLISSAAAAE SAGALGGSSA  600
AAALQSVLQS RQQQQQQQHA HQHQWRLNGS VSPLSSPIRR SVSARYSSSE RDQSLIALSP  660
SLAAAVLNRK HSFSGHEKYL DSQWRVSANG GPATTTAESS FLNLGGCSAS SMMTSSTTSS  720
GVDLSDWGSP TGKLDWGVSN EQFARFRKST SYLPSLSSRA SSLLFDEPIP DLTWVQKLVR  780
ETAGEATADC AASAALECLP RESSMERIMA GRWVDPLLQE RVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-77	C3H family protein