PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG67080.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1140aa MW: 122217 Da PI: 4.6823

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG67080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.4	3.3e-12	348	424	1	70
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 rW ++e+ L + r+e+ + ++++ lk++ W+ v ++mre+g++r+ qCk+k++++ y+++k++ek GBG67080.1 348 RWGDKETDWLCRYRNEVRTLMGEDTevygrarLKAGFWKIVEQRMREKGYNRKDDQCKNKFNQIMEXYRRLKAHEKW 424 8************88888887533444444****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1140 aa Download sequence
MANHTGYCGA GLSGIPDWGY SESQNLGPFE AEVGPVHSSQ VLGQGDVVPG QCSSMDACGG 60 GFEPPYPAQL PQEAVTSPPS IAVQHPVCPS ARVAAPPTNS AGTGRGHGPC VWKVTDGVGG 120 TLQPTHAVTG GAPLSSPXTP VRGFRIGLGG ENENALRQSL RERAMRLAEG LPADCDVGML 180 GGSAASAPRP EAVHHGSPAG SGGFSRGSAT VSAQQSPAGS GTTHGHGGBA SLQHMHGDAG 240 DTALPCNEQS PPSTYMLNCL IRDNERCPLG VQPVHNVDVG TNDIFEEETP RQQTPSSCAR 300 SSGVRTDTPS PVPSGLQSGP GTTASQSGGG ASAVPGQRSA SPPPNNERWG DKETDWLCRY 360 RNEVRTLMGE DTEVYGRARL KAGFWKIVEQ RMREKGYNRK DDQCKNKFNQ IMEXYRRLKA 420 HEKWSGRMSY WDMNKAQRKR YNVDFVLKRS WYDIIDPXEK DKDSIDLSNL MDSGADEEXL 480 EDEDLAAEAE DGMGGASAGQ SAGVGGSASG SQGTGIEPML GKRKRGPLAT SYGAACLDLD 540 CDADGDDSND EMITMPLRVI AVVGAEGRRS FEAQRGGESV ARTESACDDI GDMQVERELQ 600 ADSLSVFNIW NMFNTTLLRP PRVVLTASTN FYGNSSGDVE CSQHITNMVF TSQTGVFFYS 660 QSDYCENASA RRSVSSGHSL HKCDMRGLGS SGTAEASCSL LTLQWMSYNP NGTSVRQPYN 720 STFRSDIQFT ALDLSRSERY LVLPFANGFS GAGLAFIDTT PAVVLANSNP ASTGLQPGPL 780 WQRPLATSYG AACLDLDCDA DGDDSNDEMI TMPLRVIAVV GAEGRRSFEA QRGGESVART 840 ESACDDIGDM QVERELQADS LSVFNIWNMF NTTLLRPPRV VLTASTNFYG NSSGDVECSQ 900 HITNMVFTSQ TGVFFYSQSD YCENASARRS VSSGHSLHKC DMRGLGSSGT AEASCSLLTL 960 QWMSYNPNGT SVRQPYNSTF RSDIQFTALD LSRSERYLVL PFANGFSGAG LAFIDTTVGS 1020 RTTYNVSDLF YYSGAFNPNR TIFYLAKDDC LQYSVMDGES PETFVSDFQT RACPTSIPET 1080 LLFSHRSFLQ DGSYLYAVAN TTFVGFDLTS GVVAPLTGTP LGSCLVLTQE GCNFFFVADN

Sequence ? help Back to Top

Protein Sequence Length: 1140 aa Download sequence

MANHTGYCGA GLSGIPDWGY SESQNLGPFE AEVGPVHSSQ VLGQGDVVPG QCSSMDACGG  60
GFEPPYPAQL PQEAVTSPPS IAVQHPVCPS ARVAAPPTNS AGTGRGHGPC VWKVTDGVGG  120
TLQPTHAVTG GAPLSSPXTP VRGFRIGLGG ENENALRQSL RERAMRLAEG LPADCDVGML  180
GGSAASAPRP EAVHHGSPAG SGGFSRGSAT VSAQQSPAGS GTTHGHGGBA SLQHMHGDAG  240
DTALPCNEQS PPSTYMLNCL IRDNERCPLG VQPVHNVDVG TNDIFEEETP RQQTPSSCAR  300
SSGVRTDTPS PVPSGLQSGP GTTASQSGGG ASAVPGQRSA SPPPNNERWG DKETDWLCRY  360
RNEVRTLMGE DTEVYGRARL KAGFWKIVEQ RMREKGYNRK DDQCKNKFNQ IMEXYRRLKA  420
HEKWSGRMSY WDMNKAQRKR YNVDFVLKRS WYDIIDPXEK DKDSIDLSNL MDSGADEEXL  480
EDEDLAAEAE DGMGGASAGQ SAGVGGSASG SQGTGIEPML GKRKRGPLAT SYGAACLDLD  540
CDADGDDSND EMITMPLRVI AVVGAEGRRS FEAQRGGESV ARTESACDDI GDMQVERELQ  600
ADSLSVFNIW NMFNTTLLRP PRVVLTASTN FYGNSSGDVE CSQHITNMVF TSQTGVFFYS  660
QSDYCENASA RRSVSSGHSL HKCDMRGLGS SGTAEASCSL LTLQWMSYNP NGTSVRQPYN  720
STFRSDIQFT ALDLSRSERY LVLPFANGFS GAGLAFIDTT PAVVLANSNP ASTGLQPGPL  780
WQRPLATSYG AACLDLDCDA DGDDSNDEMI TMPLRVIAVV GAEGRRSFEA QRGGESVART  840
ESACDDIGDM QVERELQADS LSVFNIWNMF NTTLLRPPRV VLTASTNFYG NSSGDVECSQ  900
HITNMVFTSQ TGVFFYSQSD YCENASARRS VSSGHSLHKC DMRGLGSSGT AEASCSLLTL  960
QWMSYNPNGT SVRQPYNSTF RSDIQFTALD LSRSERYLVL PFANGFSGAG LAFIDTTVGS  1020
RTTYNVSDLF YYSGAFNPNR TIFYLAKDDC LQYSVMDGES PETFVSDFQT RACPTSIPET  1080
LLFSHRSFLQ DGSYLYAVAN TTFVGFDLTS GVVAPLTGTP LGSCLVLTQE GCNFFFVADN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	2e-07	Trihelix family protein