PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG66613.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Protein Properties

Length: 968aa MW: 107982 Da PI: 7.9413

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG66613.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.5	5e-18	712	811	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l+ d+++ grlvlpk +ae++ ++++e++ l++ed++gr+W+++++y +++s++yvl+ G + + +L +gD+v+F++ + +++l+++ GBG66613.1 712 FEKMLSATDAGRIGRLVLPKAYAEAYfpPIPHPEGIALKIEDQTGREWTFQFRYwpNNNSRMYVLE-GVMGCMNHLQLHAGDTVTFSRLE-PGGRLLLG 808 8999**********************888999****************899999999.*******************665.78888888 PP EE- CS B3 96 vfr 98 +r GBG66613.1 809 YRR 811 776 PP

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence
MHLVYVSAAG EPVKMPPEIE GVVAKYRDLF EEPTGVVERE VVHATKIIPG SSILKGRIYR 60 MSPGELDELC RQLKELVEKG WIRPSVSPYG SPVLFVPKKK EGTLRMCLDN RGLNAITVKN 120 REPLPRIDDL LDRVQGCRYF SKIDLKSGYH QIAIRPEDQH KTAFQTRYGL YEFVVMPFSL 180 CNAPGTFQHT MNQIFHDYLD KFVIVYLDDI LIFSKTVEEH VAHLDKVLSL LRQHKFKING 240 EKCEFGRTCV LYLGHEIFAE GLKPDDAKVA SIRDWPHPQS VTEMRSFLGM TGYYRNFVKN 300 YSIVAAPLTD LTRLDTPWEW TDRCEAAFRH LKHALTHREV LKLPDPDKPF ILRDRDCQPY 360 DARKKQQQQQ PWRWQHDEAT GHRQLSPTAG YVIKGNNAVG RRADKVDGQG EELDDGGDGH 420 CFRILQGSWT PHDRYKKHSS SREDGAVDTK SREGNNDLEM GSSGIPPHGT QKSSLENTNH 480 SPPDSAMSDE QESSHSKHQV HHPFSNQGSQ PGHLCQSEQD GQSAKRSNQR NSFAWSGGEH 540 SKKQKKQQHN CRNHDDNPKD EDEDSYSSEQ QQKEQELSGS GCRETDSLAI HIRSLSKPSP 600 ASQNSHPDDT RLCNSSDFPW RNASRWESGR GGEMRRSNGS GGHCGIGHEP AQESSGAKEH 660 GIGERSTGPT VKMEESKQKH PDKSQHNTKC LSSAGETLAV EGTEARRIIP LFEKMLSATD 720 AGRIGRLVLP KAYAEAYFPP IPHPEGIALK IEDQTGREWT FQFRYWPNNN SRMYVLEGVM 780 GCMNHLQLHA GDTVTFSRLE PGGRLLLGYR RAIRNSDGCV IASSGSGRSI AKISLSPATT 840 CSKSSPGIGK SNAAYDEAAM YDGRHPAGHA QHVCSNMQQP SNSGGQDDGR GGGGKRKGPG 900 RPPGSRKKKL RSSVEGRQAP GSGPDELSDG AGSDDSHEWT RTATFAQERT DKKFEANAVE 960 KSEVRHAS

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence

MHLVYVSAAG EPVKMPPEIE GVVAKYRDLF EEPTGVVERE VVHATKIIPG SSILKGRIYR  60
MSPGELDELC RQLKELVEKG WIRPSVSPYG SPVLFVPKKK EGTLRMCLDN RGLNAITVKN  120
REPLPRIDDL LDRVQGCRYF SKIDLKSGYH QIAIRPEDQH KTAFQTRYGL YEFVVMPFSL  180
CNAPGTFQHT MNQIFHDYLD KFVIVYLDDI LIFSKTVEEH VAHLDKVLSL LRQHKFKING  240
EKCEFGRTCV LYLGHEIFAE GLKPDDAKVA SIRDWPHPQS VTEMRSFLGM TGYYRNFVKN  300
YSIVAAPLTD LTRLDTPWEW TDRCEAAFRH LKHALTHREV LKLPDPDKPF ILRDRDCQPY  360
DARKKQQQQQ PWRWQHDEAT GHRQLSPTAG YVIKGNNAVG RRADKVDGQG EELDDGGDGH  420
CFRILQGSWT PHDRYKKHSS SREDGAVDTK SREGNNDLEM GSSGIPPHGT QKSSLENTNH  480
SPPDSAMSDE QESSHSKHQV HHPFSNQGSQ PGHLCQSEQD GQSAKRSNQR NSFAWSGGEH  540
SKKQKKQQHN CRNHDDNPKD EDEDSYSSEQ QQKEQELSGS GCRETDSLAI HIRSLSKPSP  600
ASQNSHPDDT RLCNSSDFPW RNASRWESGR GGEMRRSNGS GGHCGIGHEP AQESSGAKEH  660
GIGERSTGPT VKMEESKQKH PDKSQHNTKC LSSAGETLAV EGTEARRIIP LFEKMLSATD  720
AGRIGRLVLP KAYAEAYFPP IPHPEGIALK IEDQTGREWT FQFRYWPNNN SRMYVLEGVM  780
GCMNHLQLHA GDTVTFSRLE PGGRLLLGYR RAIRNSDGCV IASSGSGRSI AKISLSPATT  840
CSKSSPGIGK SNAAYDEAAM YDGRHPAGHA QHVCSNMQQP SNSGGQDDGR GGGGKRKGPG  900
RPPGSRKKKL RSSVEGRQAP GSGPDELSDG AGSDDSHEWT RTATFAQERT DKKFEANAVE  960
KSEVRHAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	895	909	KRKGPGRPPGSRKKK
2	895	910	KRKGPGRPPGSRKKKL
3	901	909	RPPGSRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	2e-48	B3 family protein