PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG65236.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 983aa MW: 105674 Da PI: 5.7664

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG65236.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.9	1.4e-09	365	412	17	64
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 m++++ + k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ GBG65236.1 365 MGHAYAQMKPQEWKWQDVAQRLKNVGVDRNAEKCGKKWDNLMQQFKKV 412 6777788889999*********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence
MFCRLPLLIL VVLLLLLVVL LRVCILGNVP TRRRKRRSSM KDARMEARQA IPRSGGEQVG 60 GRRCGGSLST VGRASQRVGY DALPPHLQPL PGSLDEEEEV ERRPQTVSLG SGSTPEWTAT 120 ELCGTGGGVY EQSFIELLRP GLGEDEGDGR VNLSFGLSTG RSTTPSRTVL VLPHPDNEGG 180 QLTVVDRSAR TRALASEMAG ANRNSSTAQP RAASLSKGAQ GRPEWMQLPS PLSAVSEVVR 240 GRGVGVDGGT DFLDVGNGCD GREVCRDLWR DHPLRREEYI TRGLERLHVG DRENENKTDD 300 SPAEADDDDD DNDIECGERG GGHTSPSLQS NMAGKGGSPS LPAAMLVRRR RKGRERGAVA 360 KATGMGHAYA QMKPQEWKWQ DVAQRLKNVG VDRNAEKCGK KWDNLMQQFK KVHPFQSPSG 420 GADFFQLTSK ERASKGFNFT MDRAVYDEIE GSTGMNHTIH PKNVADTGVS GSVRPPSTSY 480 VDPESVADGE EGAGREDDEE GSTRGSSQTT GTPDGSRKMK STRQQTFEAL TECMEKHGEP 540 LVPFSVFHSR RPAIIQPPHG VLVHKLCEPP TAIEGAFVGS AMSSRGAGRG KAALKQIVEG 600 AAPAKKGRHQ AKRQRKVVQA VPAGNARDVV EEVVVEEEIT NDDDDFEDDD DEPLQRKARV 660 SSAGGVRINE GGEGTPTARR GGGVAAANQP VFVDVARDLA RRDVGGRAKE GAASHETAQR 720 VLAPLNRPRT PTADVAGSSQ AAVEGGTLRS PAVAAHGGAV AVLGEPVEVP KGGDGAAAGE 780 DDEALFGEPN VVLHHIGRSL WFVGVNIVDR HEDDECAAYQ EACVQRLVRD FTSAVGTTEA 840 MDGGRVSYEC LKGMADAMSY LLAATMWIML MVWNDPRSHY DAWVFVQLMA KTTLLASMNR 900 QFDARRHITQ SAQVMTDKLG RPPPTFAPPP AYIPDWASKC GVTFSHDATL ASPMEAKRLD 960 WLGTGPPEDD DDDAEGDDKG EGG

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence

MFCRLPLLIL VVLLLLLVVL LRVCILGNVP TRRRKRRSSM KDARMEARQA IPRSGGEQVG  60
GRRCGGSLST VGRASQRVGY DALPPHLQPL PGSLDEEEEV ERRPQTVSLG SGSTPEWTAT  120
ELCGTGGGVY EQSFIELLRP GLGEDEGDGR VNLSFGLSTG RSTTPSRTVL VLPHPDNEGG  180
QLTVVDRSAR TRALASEMAG ANRNSSTAQP RAASLSKGAQ GRPEWMQLPS PLSAVSEVVR  240
GRGVGVDGGT DFLDVGNGCD GREVCRDLWR DHPLRREEYI TRGLERLHVG DRENENKTDD  300
SPAEADDDDD DNDIECGERG GGHTSPSLQS NMAGKGGSPS LPAAMLVRRR RKGRERGAVA  360
KATGMGHAYA QMKPQEWKWQ DVAQRLKNVG VDRNAEKCGK KWDNLMQQFK KVHPFQSPSG  420
GADFFQLTSK ERASKGFNFT MDRAVYDEIE GSTGMNHTIH PKNVADTGVS GSVRPPSTSY  480
VDPESVADGE EGAGREDDEE GSTRGSSQTT GTPDGSRKMK STRQQTFEAL TECMEKHGEP  540
LVPFSVFHSR RPAIIQPPHG VLVHKLCEPP TAIEGAFVGS AMSSRGAGRG KAALKQIVEG  600
AAPAKKGRHQ AKRQRKVVQA VPAGNARDVV EEVVVEEEIT NDDDDFEDDD DEPLQRKARV  660
SSAGGVRINE GGEGTPTARR GGGVAAANQP VFVDVARDLA RRDVGGRAKE GAASHETAQR  720
VLAPLNRPRT PTADVAGSSQ AAVEGGTLRS PAVAAHGGAV AVLGEPVEVP KGGDGAAAGE  780
DDEALFGEPN VVLHHIGRSL WFVGVNIVDR HEDDECAAYQ EACVQRLVRD FTSAVGTTEA  840
MDGGRVSYEC LKGMADAMSY LLAATMWIML MVWNDPRSHY DAWVFVQLMA KTTLLASMNR  900
QFDARRHITQ SAQVMTDKLG RPPPTFAPPP AYIPDWASKC GVTFSHDATL ASPMEAKRLD  960
WLGTGPPEDD DDDAEGDDKG EGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-07	Trihelix family protein