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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GBG64179.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 1099aa MW: 120517 Da PI: 8.909 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 36.7 | 1.1e-11 | 317 | 392 | 2 | 70 |
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
W+ + aL++arr m++++ r k ++ +We+v +++++ g++r ++ C +kw+nl +++kk+ + ++
GBG64179.1 317 WSVGDTIALVRARRdqdlyiaGMGTSFARMKTREWKWEDVRARLQSMGVTRDAVDCGKKWDNLMQQFKKVHKFQNL 392
899999********9999999999*********************************************9987765 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1099 aa Download sequence |
MDRRLGNGRP AGTTSGASNR QHSAGSVAKR PYDPRLYAGL PSHEIPLPLS DDEGGDARSS 60 TLPLGSGSTQ EWAATESCRG GRVETPWTYT SLLNEGXCDD DDNAAVDLSF QLSSSSGAAA 120 THTRIINPHP GVDCADNTHG GVCGPRDGGL PQSLREGGGK RNESTSSIGG GVGARERPEW 180 MRLSPSLRSG SGAPCARQWP EVLHQEGADV QRDGRQLCVE CRQALHQRGT ETITRGVQRL 240 HVDEGDEAAA GEARGCDDVD CDDDCNSDDL PDIRPLGRKA TKGGATARQV PAAKSRRNKK 300 MDDDTGRSDG EGGRNFWSVG DTIALVRARR DQDLYIAGMG TSFARMKTRE WKWEDVRARL 360 QSMGVTRDAV DCGKKWDNLM QQFKKVHKFQ NLSDGKDYFK LASKERRSEG FSFVMDWSMP 420 AAAGAAGDTM GSEGGGDAAD EEQGSTRDST FSAGSGGGYG KRKNMRQQTF EAVADVMEKH 480 GALMANTMDS ASKRQCSMMS RQCEILESEV EVQRKHYAAA NEANRMMCQA LMEIARNRRR 540 GPSVCSTLSV HRPVVHHKGL PLAPSPALKV CTHGAQRRHP GRTPSSFSPR RRSTKGPRSR 600 SFLRSRRRLG CLRRRRFFAV DLFDLLLAAE PSCRGSASRL QRSAVHQSPR SSSRRGAVYA 660 AYVSFTRGTS SVSSSIVALD PVALLLAVDP SSRGYVSPLR RSVVAYSRSS SSDRGEVSAW 720 FISFSRSRRR GRTVRGEGED ELLPRAAKAL VRRGREERRS HKRSLTEAGA NEEEDDDVFT 780 TEEEAAEENV TATRGSTLQR SGDQSGARRL ATPPPEAQQV RAHNTQKAKE VVVDVGGEDD 840 EPLESRRQRN VTQAAGSSGN VGVVARAREE VPVVEREATR IDNKGEREDE DPLLSRVRRG 900 GLARDVADRA RLWVDDKAFW TTGEGRRLYN IVHETREYFV TIASGMQTPP LPRSVVMPKS 960 STTVTRIADP AQLQRAIARA TTAENIALRV LHRWVFKSEN RPRGFNVAFQ YALESVATDI 1020 ARIMWNGEEW SNVVSAPVCT HTIDLNMDMP LWFAGTNIED RPEDDDMAAH QESTVRFAPR 1080 CKLVASSTVV SSRTSVCLE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 590 | 609 | RRRSTKGPRSRSFLRSRRRL |
| 2 | 591 | 610 | RRRSTKGPRSRSFLRSRRRL |
| 3 | 758 | 764 | RRSHKRS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G35640.1 | 9e-07 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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