PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG64121.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 781aa MW: 85313.7 Da PI: 6.8739

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG64121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.2	5.1e-14	432	504	2	67
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ + GBG64121.1 432 WSVEHIIALIRAKRDQDAHMQgmghayaRMKPREWKWQDVAQRLKNVGVDRNAEKCGKKWDNLMQQFKKVHHF 504 9***********7777777444333367899**********************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence
MSQRSADTNI SGRTPAPNYA LSVGDRRRPQ DDRLQHCAPL LCWRPRCLPF AAVVIDCFMA 60 DVFRRLPLLI LVVLLLLLVV LFRVCILGNV PPRRRKRSSM KDARMEARQA IPRSGGEQVG 120 GRRCGGSLST VGRASQRVGY DALPPHLQPL PGSSDEEEVV ERRPQTVSLG SGSTQEWTAT 180 ELCGTGAGVY EQSFTELLRP GLGEDEGDGR VNLSFGLSTG RSTTPSRTVL VRPHPGDEGG 240 QLTVVDRSAR TRALASETAG TNRNSSTPQP RVGSLSKGAK GRPEWMQLPS PLSAASEVAR 300 GRGVGVDGGT DFLDVGNGRD GREVCRDLRR DHLLRREEYI TRGVERLHVG DRENENETDD 360 PPADADDDDD NDVECGEGGV GHASPSLQSD MAGKGGKSKP SGRNARLRAK KGQGKGSGGE 420 GDGDAEEKRN FWSVEHIIAL IRAKRDQDAH MQGMGHAYAR MKPREWKWQD VAQRLKNVGV 480 DRNAEKCGKK WDNLMQQFKK VHHFQSPSRG ADFFKLTLKE RASKGFNFTM DRAVYDETEG 540 STGMNHTIHP KNVEDIGASG GVRPPSTSYV DPESVADGEG GAAREHDEEG STRGFSQTTG 600 TPDGSGKRKR TRQQTFEALT ECMEKHGELM TSTMESASKR QCSIQVRQCE ALEAKVEVQR 660 KHYAASDEVS KLMCHTLLEI ANPGNVIGKE VELVDESHPS SNGVVDVVLG LVEDQRIVVR 720 YPAKLALTKE EVPPPLVDEG EELLLACIVN GMHDGHFLAK VLDRVPVHTI MLLEDCTNAI 780 A

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence

MSQRSADTNI SGRTPAPNYA LSVGDRRRPQ DDRLQHCAPL LCWRPRCLPF AAVVIDCFMA  60
DVFRRLPLLI LVVLLLLLVV LFRVCILGNV PPRRRKRSSM KDARMEARQA IPRSGGEQVG  120
GRRCGGSLST VGRASQRVGY DALPPHLQPL PGSSDEEEVV ERRPQTVSLG SGSTQEWTAT  180
ELCGTGAGVY EQSFTELLRP GLGEDEGDGR VNLSFGLSTG RSTTPSRTVL VRPHPGDEGG  240
QLTVVDRSAR TRALASETAG TNRNSSTPQP RVGSLSKGAK GRPEWMQLPS PLSAASEVAR  300
GRGVGVDGGT DFLDVGNGRD GREVCRDLRR DHLLRREEYI TRGVERLHVG DRENENETDD  360
PPADADDDDD NDVECGEGGV GHASPSLQSD MAGKGGKSKP SGRNARLRAK KGQGKGSGGE  420
GDGDAEEKRN FWSVEHIIAL IRAKRDQDAH MQGMGHAYAR MKPREWKWQD VAQRLKNVGV  480
DRNAEKCGKK WDNLMQQFKK VHHFQSPSRG ADFFKLTLKE RASKGFNFTM DRAVYDETEG  540
STGMNHTIHP KNVEDIGASG GVRPPSTSYV DPESVADGEG GAAREHDEEG STRGFSQTTG  600
TPDGSGKRKR TRQQTFEALT ECMEKHGELM TSTMESASKR QCSIQVRQCE ALEAKVEVQR  660
KHYAASDEVS KLMCHTLLEI ANPGNVIGKE VELVDESHPS SNGVVDVVLG LVEDQRIVVR  720
YPAKLALTKE EVPPPLVDEG EELLLACIVN GMHDGHFLAK VLDRVPVHTI MLLEDCTNAI  780
A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	PRRRK
2	405	413	ARLRAKKGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-10	Trihelix family protein