PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG63025.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 716aa MW: 77776.8 Da PI: 5.8225

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG63025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.8	3.6e-10	240	316	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekk 70 Wt ++ a i+a+r ++++++r k k +W++v k++ + g+ +r+++ C++kw+nl +++k + + +++ GBG63025.1 240 WTVDHMIAVIRAKRdqdlhlaGLGHNSGRMKTKTWKWDDVEKRLVQMGLmSRKAEDCRKKWDNLYQQFKTVHKFMGE 316 9***********555555555566667899********9999989****************99876665 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MGSQLYRQTS TPTYTDLLER RTPVGYDAGL VDLSFGLRSG SAEDVTHTVL VNPTSDTNHA 60 PPSVGLSGLP DTHAWCSGQS GDERGVLLRR RGAVVTAGVA VSRTRTGGST TPTGRIDGRG 120 DDDEGSAAEV VGRKVWDDHR RQSRQSSKSA ITRGVANINV RADDVFGDCD GAGGEDCAAG 180 NGSNDNDEDD DGKMEIRPIG RKRGGSRATN KSTEPRAGRG GKKGAGDTST CEVAKSRDFW 240 TVDHMIAVIR AKRDQDLHLA GLGHNSGRMK TKTWKWDDVE KRLVQMGLMS RKAEDCRKKW 300 DNLYQQFKTV HKFMGESGKP NFFTLTPGER KERGFDFRMD ERVYSKMKAM SRGDHTIHPT 360 NLADTGVAEG VQMPCPRGGR NESGGSEGCG DGQDDDQGST RDSTFSGVGG GGGGRRKNVR 420 QQTFDTIADD GGQREQEAVL NSDEAMQHSG ARARSAEGTL PPSAQKGDTT ASDTRTSAAD 480 HSSRSVVAEG AEEARVDDVR HDDGRREGKR EGDDDDDRPL VTRLKGAAKE DDVEERSKLW 540 VDCDAFWDQG PGKPLREAVG DCADYFVAIA NGGAGAEPPA MLVMPPNDVP RFKIEDPAKR 600 EPALCRARNV EKLVLRTIHG WIFKSSSRST GFACAESYIS VDLATDVARA VWQGYEWSNV 660 VSPTLVYHTL AIKMDVPLWF AGVKIVDRPE DDDMAARQEA TILRMVDCWT DAVWCG

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MGSQLYRQTS TPTYTDLLER RTPVGYDAGL VDLSFGLRSG SAEDVTHTVL VNPTSDTNHA  60
PPSVGLSGLP DTHAWCSGQS GDERGVLLRR RGAVVTAGVA VSRTRTGGST TPTGRIDGRG  120
DDDEGSAAEV VGRKVWDDHR RQSRQSSKSA ITRGVANINV RADDVFGDCD GAGGEDCAAG  180
NGSNDNDEDD DGKMEIRPIG RKRGGSRATN KSTEPRAGRG GKKGAGDTST CEVAKSRDFW  240
TVDHMIAVIR AKRDQDLHLA GLGHNSGRMK TKTWKWDDVE KRLVQMGLMS RKAEDCRKKW  300
DNLYQQFKTV HKFMGESGKP NFFTLTPGER KERGFDFRMD ERVYSKMKAM SRGDHTIHPT  360
NLADTGVAEG VQMPCPRGGR NESGGSEGCG DGQDDDQGST RDSTFSGVGG GGGGRRKNVR  420
QQTFDTIADD GGQREQEAVL NSDEAMQHSG ARARSAEGTL PPSAQKGDTT ASDTRTSAAD  480
HSSRSVVAEG AEEARVDDVR HDDGRREGKR EGDDDDDRPL VTRLKGAAKE DDVEERSKLW  540
VDCDAFWDQG PGKPLREAVG DCADYFVAIA NGGAGAEPPA MLVMPPNDVP RFKIEDPAKR  600
EPALCRARNV EKLVLRTIHG WIFKSSSRST GFACAESYIS VDLATDVARA VWQGYEWSNV  660
VSPTLVYHTL AIKMDVPLWF AGVKIVDRPE DDDMAARQEA TILRMVDCWT DAVWCG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	414	421	GRRKNVRQ