PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG62569.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 1145aa MW: 116243 Da PI: 7.7176

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG62569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.1e-17	50	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W++Ia++++ gR++k+c++rw++ GBG62569.1 50 RGHWRPAEDEKLQELVALHGPQNWNLIAEKLP-GRSGKSCRLRWFNQ 95 899***************************.*********996 PP
2	Myb_DNA-binding	56.5	6.3e-18	102	145	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ GBG62569.1 102 RRPFTEEEEERLLAAHRFHGNK-WALIARLFP-GRTDNAIKNHWHV 145 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1145 aa Download sequence
MRELEQEDMS GGRGGGGGGG GERSLSIGVG SAGGEEASMR ECVEPKVRTR GHWRPAEDEK 60 LQELVALHGP QNWNLIAEKL PGRSGKSCRL RWFNQLDPRN NRRPFTEEEE ERLLAAHRFH 120 GNKWALIARL FPGRTDNAIK NHWHVIMARN NREKKWGKAS VLRVGNTVCR KAGSCWGGEE 180 GGVVNESNGR DVMVSQGAAI AAAVAAQAAA AQGGGSCHRE GSEGGGTMMP RQQQQQQRAV 240 GAGAAGGSPI ALGMGMGMGG PNLLAAGALA AQASLHQAAA MAAMEHRMDL RGGGATSEDL 300 LQSAAGHVRI ALRDGRPDGP VAAALPISWC GGAGGGGGGG GGGVPNLHHV NENGGVGCTG 360 SSVHCAGSPE GPSTSGSSTS NRNTFRKVLT GVGASQDLAS VSTAAAAAAA AACNVESLDS 420 RLDYNNTHAN HAHHPHLQQQ QQQQAAAAVA VEVLRLRQAA VSAGGHGLAA AAGGGGPPSS 480 SLPDTLAASA TSMVISTYPL HSPVLEQPLI TRSPSSIAAG EGGRGSPGSS SKVVKSTCSL 540 LPHSSTFLEL APRKAQSCTL TLSASDGTSP PPSSPSPLAI GRGLRSGGCG AFTPYSEFLQ 600 VAPSCERDGE RDRMGGRGAG GPPSTSGRGQ QEVPGTGSGT GTASPSAAVM GAAAAAAEAA 660 RRHQQLQACH AISLSNVRNE GVDGGGRFPP MAGAAKSVAA GGAEAERAAE WTLKAAVAQQ 720 SRSGPMVEDE VRPPPNFSLK STMKTEKLEK EPSSSCEGGG GAWCRLPKWL LSPHSSTITD 780 LTRSSRTTNG GGVSEVDNGD GDVSSSTFLL QQLAHDQRVM QQQAQQQQQM LAAAAATCRQ 840 QQQQHCVAAA AAAAAAGAAD GLLAGGGHVD DERQPQLELQ QRLIGEAALR QLLLAQRHQA 900 GGGAGAGGSE MMDVAALTSA QWEQVSAFLR GWMAVDYGAA AAALAAAATA AAASASASAS 960 GSSSLTGSVS SEQAAAAAAA AAGVMLGGRG PSPASCASSH QLHPHAAVNV QSAGRFSSSS 1020 PQSVRHYPAR PDQADLEPPT VMRMMKTPAV AVNATGMVID SGMNPLEEAG RRMVTSWRQA 1080 GDGMAPWSSS ADFEATTPSA RPMTAPRGEP TTSGLETSRN MVVDSIGGSS RPITFFDFLG 1140 VGAIA

Sequence ? help Back to Top

Protein Sequence Length: 1145 aa Download sequence

MRELEQEDMS GGRGGGGGGG GERSLSIGVG SAGGEEASMR ECVEPKVRTR GHWRPAEDEK  60
LQELVALHGP QNWNLIAEKL PGRSGKSCRL RWFNQLDPRN NRRPFTEEEE ERLLAAHRFH  120
GNKWALIARL FPGRTDNAIK NHWHVIMARN NREKKWGKAS VLRVGNTVCR KAGSCWGGEE  180
GGVVNESNGR DVMVSQGAAI AAAVAAQAAA AQGGGSCHRE GSEGGGTMMP RQQQQQQRAV  240
GAGAAGGSPI ALGMGMGMGG PNLLAAGALA AQASLHQAAA MAAMEHRMDL RGGGATSEDL  300
LQSAAGHVRI ALRDGRPDGP VAAALPISWC GGAGGGGGGG GGGVPNLHHV NENGGVGCTG  360
SSVHCAGSPE GPSTSGSSTS NRNTFRKVLT GVGASQDLAS VSTAAAAAAA AACNVESLDS  420
RLDYNNTHAN HAHHPHLQQQ QQQQAAAAVA VEVLRLRQAA VSAGGHGLAA AAGGGGPPSS  480
SLPDTLAASA TSMVISTYPL HSPVLEQPLI TRSPSSIAAG EGGRGSPGSS SKVVKSTCSL  540
LPHSSTFLEL APRKAQSCTL TLSASDGTSP PPSSPSPLAI GRGLRSGGCG AFTPYSEFLQ  600
VAPSCERDGE RDRMGGRGAG GPPSTSGRGQ QEVPGTGSGT GTASPSAAVM GAAAAAAEAA  660
RRHQQLQACH AISLSNVRNE GVDGGGRFPP MAGAAKSVAA GGAEAERAAE WTLKAAVAQQ  720
SRSGPMVEDE VRPPPNFSLK STMKTEKLEK EPSSSCEGGG GAWCRLPKWL LSPHSSTITD  780
LTRSSRTTNG GGVSEVDNGD GDVSSSTFLL QQLAHDQRVM QQQAQQQQQM LAAAAATCRQ  840
QQQQHCVAAA AAAAAAGAAD GLLAGGGHVD DERQPQLELQ QRLIGEAALR QLLLAQRHQA  900
GGGAGAGGSE MMDVAALTSA QWEQVSAFLR GWMAVDYGAA AAALAAAATA AAASASASAS  960
GSSSLTGSVS SEQAAAAAAA AAGVMLGGRG PSPASCASSH QLHPHAAVNV QSAGRFSSSS  1020
PQSVRHYPAR PDQADLEPPT VMRMMKTPAV AVNATGMVID SGMNPLEEAG RRMVTSWRQA  1080
GDGMAPWSSS ADFEATTPSA RPMTAPRGEP TTSGLETSRN MVVDSIGGSS RPITFFDFLG  1140
VGAIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	19	GGRGGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73410.1	4e-55	MYB family protein