PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG62286.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 575aa MW: 62735.3 Da PI: 7.3005

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG62286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.3	6e-11	341	412	1	65
trihelix 1 rWtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 rW ++e+ +L + r+ e e ++r+++k++ W+ v ++m+erg++r qCk k++++ y+ ++ GBG62286.1 341 RWGEEETTVLCQTRNetkallgEETEGMGRARAKAGFWKNVEDRMWERGYNRDHYQCKGKFSQVMDFYRPLT 412 8************44444444444444567******************************99998665 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MGCYAHVKTV GDCSISPPRR VHGLGGGPLR YVESAFVLSV SNLPTSIRCH LRYVLSLTPS 60 SKPCFAPNTS STFLQPRSIF SPMETPDENV GLSCIVDWGY LESQYGTPHA DHAQQTGALR 120 GQPGFAPPPN ATEHAFCMEE TVAGVTDVLG TQVPNSQFFG SRGPGRGSPC RDVDATLLLP 180 LSSPRTPVAG LSYGVTVRDE NYLRQQFWMR AIAMAKGQSR NPFVVAGSRV PHLSPSHSEA 240 LRTVTPATSP LAVGDCSNGP RRSLDGGSAG FIDGGLGNPD VPIRAHVSPQ ALPSRDANAH 300 AANDGPSYVP ATDVGGYGSS AGGRPQRGRV RLPDPPKNLD RWGEEETTVL CQTRNETKAL 360 LGEETEGMGR ARAKAGFWKN VEDRMWERGY NRDHYQCKGK FSQVMDFYRP LTIHEGWSGL 420 PSYWDMNQTK RKRYNEEGDE WDKNDAKFKV LTQQIVGSIT TRPAGKEVTG GASVNPVRAP 480 SLLPKDRSTK VDSGIQDAKE VVEGTMNIIQ LKEMFLLQNG SGDEKGEPWD VKRLAERYKV 540 DAEALENVIW NMSLPTVPTT TVDDGDRVSV WREPN

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MGCYAHVKTV GDCSISPPRR VHGLGGGPLR YVESAFVLSV SNLPTSIRCH LRYVLSLTPS  60
SKPCFAPNTS STFLQPRSIF SPMETPDENV GLSCIVDWGY LESQYGTPHA DHAQQTGALR  120
GQPGFAPPPN ATEHAFCMEE TVAGVTDVLG TQVPNSQFFG SRGPGRGSPC RDVDATLLLP  180
LSSPRTPVAG LSYGVTVRDE NYLRQQFWMR AIAMAKGQSR NPFVVAGSRV PHLSPSHSEA  240
LRTVTPATSP LAVGDCSNGP RRSLDGGSAG FIDGGLGNPD VPIRAHVSPQ ALPSRDANAH  300
AANDGPSYVP ATDVGGYGSS AGGRPQRGRV RLPDPPKNLD RWGEEETTVL CQTRNETKAL  360
LGEETEGMGR ARAKAGFWKN VEDRMWERGY NRDHYQCKGK FSQVMDFYRP LTIHEGWSGL  420
PSYWDMNQTK RKRYNEEGDE WDKNDAKFKV LTQQIVGSIT TRPAGKEVTG GASVNPVRAP  480
SLLPKDRSTK VDSGIQDAKE VVEGTMNIIQ LKEMFLLQNG SGDEKGEPWD VKRLAERYKV  540
DAEALENVIW NMSLPTVPTT TVDDGDRVSV WREPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-06	Trihelix family protein