PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG62051.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 637aa MW: 68481.3 Da PI: 6.3119

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG62051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.5	4.8e-10	356	431	1	69
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 rW ++e+ L ++r+e++ + ++ k++ W+ v +m+++g++r kqCk+k++++ +y+k+k +e+ GBG62051.1 356 RWGEDETTWLCRFRNEVKLLMIEDTeaygwagVKGNFWKFVELRMKAKGYNRDHKQCKNKFNQVIEYYQKLKCHER 431 8************66666655433444444*************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MASASDPTGL SCIQDWGYTE SQYGTQGPDN APPAVPAPEQ AGMYTQLPSA FSRDCGSLNG 60 TGSETQWPFE DGVGTQVPSS RPLGTLGQVG MRVGSGVRSS DPALSQVPEP HDVTGRVTHV 120 PKSDSGTPLP GFCTPIQPIG GFSFGASGED EHSLRESLRR RAIAMAEGHS STPHCAQHLS 180 FHSDVAPRDN CRAGSSGLSP ITSADHVTSA SPTQRGGAAT TPPVSDVAGG AGGSSSSPAG 240 HGIPYSPSVA SQHHVPSEYL INRLIRDIED GISPAHNAAD TAAADNVGGN AAAPSRTPPR 300 QSGDLTPVNG TPTRADARGQ SSQSPSGVVC EAGTSPAARP QGQQGRACPS EKNKDRWGED 360 ETTWLCRFRN EVKLLMIEDT EAYGWAGVKG NFWKFVELRM KAKGYNRDHK QCKNKFNQVI 420 EYYQKLKCHE RWSGLPSYWD MNSTRRKKYN VDFVLRQSWY DIIDSVEKDM DSINLTYLRD 480 GGDDPRRHMD TDDMADADGE TEGVSDDPAG GSRDASGGSR STTFEPMLGK RKIAISNARE 540 ASVQAVTSAM RDHTTALTRS DRECAKMRCD TTRDVAKQQA ELATQLMQQD VAGRERVATI 600 VGDRVESGYN RLADDILMMG SRRRSRSSND PRSSQSE

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MASASDPTGL SCIQDWGYTE SQYGTQGPDN APPAVPAPEQ AGMYTQLPSA FSRDCGSLNG  60
TGSETQWPFE DGVGTQVPSS RPLGTLGQVG MRVGSGVRSS DPALSQVPEP HDVTGRVTHV  120
PKSDSGTPLP GFCTPIQPIG GFSFGASGED EHSLRESLRR RAIAMAEGHS STPHCAQHLS  180
FHSDVAPRDN CRAGSSGLSP ITSADHVTSA SPTQRGGAAT TPPVSDVAGG AGGSSSSPAG  240
HGIPYSPSVA SQHHVPSEYL INRLIRDIED GISPAHNAAD TAAADNVGGN AAAPSRTPPR  300
QSGDLTPVNG TPTRADARGQ SSQSPSGVVC EAGTSPAARP QGQQGRACPS EKNKDRWGED  360
ETTWLCRFRN EVKLLMIEDT EAYGWAGVKG NFWKFVELRM KAKGYNRDHK QCKNKFNQVI  420
EYYQKLKCHE RWSGLPSYWD MNSTRRKKYN VDFVLRQSWY DIIDSVEKDM DSINLTYLRD  480
GGDDPRRHMD TDDMADADGE TEGVSDDPAG GSRDASGGSR STTFEPMLGK RKIAISNARE  540
ASVQAVTSAM RDHTTALTRS DRECAKMRCD TTRDVAKQQA ELATQLMQQD VAGRERVATI  600
VGDRVESGYN RLADDILMMG SRRRSRSSND PRSSQSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-07	Trihelix family protein