PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG60552.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

MYB

Protein Properties

Length: 1503aa MW: 155361 Da PI: 6.6988

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG60552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.4e-12	104	151	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 rg W +eEde+l+ +v+ G+++W++I +tmg + R++k+c++rw ++l GBG60552.1 104 RGVWLPEEDEILKGYVANQGPKNWSSI-ETMGlLARSGKSCRLRWMNHL 151 899*********************8.78999************96 PP
2	Myb_DNA-binding	39.5	1.3e-12	161	202	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eE+ + v k++G++ W+ Ia+ + gRt++++k++w++ GBG60552.1 161 KFTPEEEAIVVTKQKLHGNK-WAQIAKSLS-GRTDNDVKNFWNM 202 89****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1503 aa Download sequence
MDSGGGAVVD ADDSALPAQH QGQSHPQAHG QKVAAQQQSV GGGKGGGAGP AVCKSESDAA 60 AAVGGAHGSS PLSLAGDEAS AAAAGGKGVS GGAPAVGPKR PLKRGVWLPE EDEILKGYVA 120 NQGPKNWSSI ETMGLLARSG KSCRLRWMNH LRPDLNRRST KFTPEEEAIV VTKQKLHGNK 180 WAQIAKSLSG RTDNDVKNFW NMRMKKLAKL ARLEKQRQRQ LLISQGSPIA MAAAAMGLPP 240 GARMLASPGD VVVSFNPRTI AEAAAQQRLM VSSSAVPAHH HRLQNFCNAS AGLAGNGGLT 300 GMGTAGASIH ALACGNGGGG AGSGSLGDIF ASPSPKGYVH GSAMGDLLHV DPDCIMSTSS 360 ILNHHHHHPH HLSPHHHHIH HSLHGLSPTN GTCGTNGGTA GVSPTSAAAA AAAAAAAAAL 420 MSGCGDGRSG ALSAALQASG KAIGGSGGVG DCSIANHHDP CGRLMTVGGA LEHHHQHHHH 480 HHQNQLLMQA RGCGLLLHSG GGLHAVLNRW GDLKGQSLGG VGGRGSSDGD SVVPISAGGS 540 PSFMQACGLA TTPSAQCLMT PCTRPGSVLT GVGRTSPTCM PVHLSEMLKV HNSPVSLVCD 600 MTTGKPTMDG LTKALGFAEP QSADVGDSGI GSGGVCLDGG VTTDCSTDPN MSSSCNSTES 660 SGTHQPQYMM TGGSTGMAAS GVPSCAAPLN GQGAMAPSVA RAAAVTCLDG DVESPTVFRN 720 NNMPRSTSAG TATVPAGAIN LDVERNLVSN SNAFSTADRA LEAVTNGKAA MSGGGNGSGA 780 SSSSPSHRHQ QQQSVGCTAS SKDLLDNLGI GVEGAVRSAV NGANIAAAIG QSLMPLDVCF 840 GRAGVDVDAG LATMSESQAT TMSAPPRMSP RMSSSNVTLR GQTTPVLNRS PSFTFSADMA 900 ATTPRSSSIA AGGTGTTLMV GGEKRQRAPG TVSDRVPTSR QQRSQADDNA FSSVAEHGNT 960 GPSVVAMEAT AAIDNLSPRE RRVPLLSVAA QSRQKQEQLE QQQRQQQQQQ EQQQQQQQEQ 1020 QLQRGEFDRV PRCLPASPDF GTTTMRQFGG LASSGMGCAA ATMAIMMAGR PDQALLMMAG 1080 GPTTGPELAS LNAVVPSRQD FQAAPQEIGE NRTDVQVDDE EEEEEEAEEE DDEEETAEVI 1140 DSKAIMDWDF GGIGVVPSGT RAWPGSTGAG MSGFLSGPQP VTLPSHDPRQ QQQQHQHQHQ 1200 QQQQQQQQQH HEQVRGLIAR DARHVLLGQL EGDRDDEEMV SRVTCADLGC QPQSRSGHRR 1260 SQPQVRISCP NSDPDQDTAA SMGSDSDPGF SDGMQVEPSK AMISGLRVGG VGSRYMDAAY 1320 GSTHPCASSA AVETSSPLTQ TSRLQMRMPT TVGIHTQPTN GRRLAVGFSG HAHPQQEQQQ 1380 HHYRFCSSSL LQTNGMRDAT PPLGEAAVPP LRKRVETGDV CGVAGASALR YGGPPSAMTS 1440 VSHADTFRKG NDCLESNRLA SVPVSAVLSG GDGSLSWAQQ YNDLDTVFLD SEADSIERML 1500 DSC

Sequence ? help Back to Top

Protein Sequence Length: 1503 aa Download sequence

MDSGGGAVVD ADDSALPAQH QGQSHPQAHG QKVAAQQQSV GGGKGGGAGP AVCKSESDAA  60
AAVGGAHGSS PLSLAGDEAS AAAAGGKGVS GGAPAVGPKR PLKRGVWLPE EDEILKGYVA  120
NQGPKNWSSI ETMGLLARSG KSCRLRWMNH LRPDLNRRST KFTPEEEAIV VTKQKLHGNK  180
WAQIAKSLSG RTDNDVKNFW NMRMKKLAKL ARLEKQRQRQ LLISQGSPIA MAAAAMGLPP  240
GARMLASPGD VVVSFNPRTI AEAAAQQRLM VSSSAVPAHH HRLQNFCNAS AGLAGNGGLT  300
GMGTAGASIH ALACGNGGGG AGSGSLGDIF ASPSPKGYVH GSAMGDLLHV DPDCIMSTSS  360
ILNHHHHHPH HLSPHHHHIH HSLHGLSPTN GTCGTNGGTA GVSPTSAAAA AAAAAAAAAL  420
MSGCGDGRSG ALSAALQASG KAIGGSGGVG DCSIANHHDP CGRLMTVGGA LEHHHQHHHH  480
HHQNQLLMQA RGCGLLLHSG GGLHAVLNRW GDLKGQSLGG VGGRGSSDGD SVVPISAGGS  540
PSFMQACGLA TTPSAQCLMT PCTRPGSVLT GVGRTSPTCM PVHLSEMLKV HNSPVSLVCD  600
MTTGKPTMDG LTKALGFAEP QSADVGDSGI GSGGVCLDGG VTTDCSTDPN MSSSCNSTES  660
SGTHQPQYMM TGGSTGMAAS GVPSCAAPLN GQGAMAPSVA RAAAVTCLDG DVESPTVFRN  720
NNMPRSTSAG TATVPAGAIN LDVERNLVSN SNAFSTADRA LEAVTNGKAA MSGGGNGSGA  780
SSSSPSHRHQ QQQSVGCTAS SKDLLDNLGI GVEGAVRSAV NGANIAAAIG QSLMPLDVCF  840
GRAGVDVDAG LATMSESQAT TMSAPPRMSP RMSSSNVTLR GQTTPVLNRS PSFTFSADMA  900
ATTPRSSSIA AGGTGTTLMV GGEKRQRAPG TVSDRVPTSR QQRSQADDNA FSSVAEHGNT  960
GPSVVAMEAT AAIDNLSPRE RRVPLLSVAA QSRQKQEQLE QQQRQQQQQQ EQQQQQQQEQ  1020
QLQRGEFDRV PRCLPASPDF GTTTMRQFGG LASSGMGCAA ATMAIMMAGR PDQALLMMAG  1080
GPTTGPELAS LNAVVPSRQD FQAAPQEIGE NRTDVQVDDE EEEEEEAEEE DDEEETAEVI  1140
DSKAIMDWDF GGIGVVPSGT RAWPGSTGAG MSGFLSGPQP VTLPSHDPRQ QQQQHQHQHQ  1200
QQQQQQQQQH HEQVRGLIAR DARHVLLGQL EGDRDDEEMV SRVTCADLGC QPQSRSGHRR  1260
SQPQVRISCP NSDPDQDTAA SMGSDSDPGF SDGMQVEPSK AMISGLRVGG VGSRYMDAAY  1320
GSTHPCASSA AVETSSPLTQ TSRLQMRMPT TVGIHTQPTN GRRLAVGFSG HAHPQQEQQQ  1380
HHYRFCSSSL LQTNGMRDAT PPLGEAAVPP LRKRVETGDV CGVAGASALR YGGPPSAMTS  1440
VSHADTFRKG NDCLESNRLA SVPVSAVLSG GDGSLSWAQQ YNDLDTVFLD SEADSIERML  1500
DSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-34	MYB family protein