PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG60484.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

TCP

Protein Properties

Length: 683aa MW: 67647.6 Da PI: 10.3653

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG60484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	86.7	5.3e-27	60	311	2	125
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................... 65 g+kdrhsk+ T +g+RdRRvRls++ a f+d+qd+LGf +s ++eWLl a pai l+++ GBG60484.1 60 SGGKDRHSKVQTYQGLRDRRVRLSVPAALAFYDVQDRLGFEHPSSAVEWLLHHAAPAIASLPQLpprlgqvglavspsvaggtggpffqydgatagsgg 158 689*************************************************************99999999999999999999999999999999999 PP TCP 66 .................................................................ssssaseceaesssssasnsssg........... 88 s ss ss+ GBG60484.1 159 geggggggggggggdgggshggggvageqllsfavpasrmsaamashlasppsfsssplptmpsvS-----------SS------SSSpvvaaptflhq 240 999999999999999999999999999999988888887777777776433322222222111110...........11......11133444455555 PP TCP 89 ..................................kaaksaa.kskksqksaasalnlakesrakarararer 125 + a++ a ++ + + aa + ++ ra+arara+ r GBG60484.1 241 aqpllpppsssfasprlavvgcssasssaavvatA-AAAGApSPLSGPGGAARSSPTRAQARAEARARAKAR 311 55566777777777777777777777766666422.222221222222222222222224444444444443 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MSADNTPSPT TPCSSPSGEG KRKFCKVEGG AQEASEEQGG GGGRGGGGGL TKKRKPNRAS 60 GGKDRHSKVQ TYQGLRDRRV RLSVPAALAF YDVQDRLGFE HPSSAVEWLL HHAAPAIASL 120 PQLPPRLGQV GLAVSPSVAG GTGGPFFQYD GATAGSGGGE GGGGGGGGGG GGDGGGSHGG 180 GGVAGEQLLS FAVPASRMSA AMASHLASPP SFSSSPLPTM PSVSSSSSSP VVAAPTFLHQ 240 AQPLLPPPSS SFASPRLAVV GCSSASSSAA VVATAAAAGA PSPLSGPGGA ARSSPTRAQA 300 RAEARARAKA RVASREATER TGSGGSCTLS ALTLTAACSP PESSSITSAT AAGTSTATTT 360 TTTITTAPIG TSTTGTTMTS TATPPPIAAT QPATSPPSSS PSPRPPQSQA HSSCLIGSVA 420 AQPPPHVPAA GIAISASLLS IVQSSSSRSL GGAAATGGSG ASPAVAPSSI VQSSAFQPPM 480 ASCASSAERL LAPSSVAHVA RPPAPGSGPS SRVSPAAPPA ASAMIGGGHH YYSLQQPFAT 540 SAAVCTSLDS SPPRHAAAVA CAAVGMASPL QTPLSSVPST GKPPPNLPRP SVSGIGPIRP 600 VRGVAPFAGS GQTLPPSHHQ EQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQNHH 660 HHHDQQQASP RSTAPSPCQQ QQQ

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MSADNTPSPT TPCSSPSGEG KRKFCKVEGG AQEASEEQGG GGGRGGGGGL TKKRKPNRAS  60
GGKDRHSKVQ TYQGLRDRRV RLSVPAALAF YDVQDRLGFE HPSSAVEWLL HHAAPAIASL  120
PQLPPRLGQV GLAVSPSVAG GTGGPFFQYD GATAGSGGGE GGGGGGGGGG GGDGGGSHGG  180
GGVAGEQLLS FAVPASRMSA AMASHLASPP SFSSSPLPTM PSVSSSSSSP VVAAPTFLHQ  240
AQPLLPPPSS SFASPRLAVV GCSSASSSAA VVATAAAAGA PSPLSGPGGA ARSSPTRAQA  300
RAEARARAKA RVASREATER TGSGGSCTLS ALTLTAACSP PESSSITSAT AAGTSTATTT  360
TTTITTAPIG TSTTGTTMTS TATPPPIAAT QPATSPPSSS PSPRPPQSQA HSSCLIGSVA  420
AQPPPHVPAA GIAISASLLS IVQSSSSRSL GGAAATGGSG ASPAVAPSSI VQSSAFQPPM  480
ASCASSAERL LAPSSVAHVA RPPAPGSGPS SRVSPAAPPA ASAMIGGGHH YYSLQQPFAT  540
SAAVCTSLDS SPPRHAAAVA CAAVGMASPL QTPLSSVPST GKPPPNLPRP SVSGIGPIRP  600
VRGVAPFAGS GQTLPPSHHQ EQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQNHH  660
HHHDQQQASP RSTAPSPCQQ QQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	49	GGGGRGGGGG
2	41	50	GGGGRGGGGG
3	42	51	GGGGRGGGGG
4	297	306	RAQARAEARA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-24	TCP family protein