PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG60171.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 473aa MW: 51749.8 Da PI: 10.3079

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG60171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.2	2.1e-13	204	274	2	65
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 W+ +++ aLi+a+r+ + +++ r+k ++ +W++v+++++ g++r++++C + w+nl +++kk+ GBG60171.1 204 WSVEHIIALIRAKRDQDAHMQgmghayaRTKPREWKWQDVAQRLKNVGVHRKAEKCGKNWDNLMQQFKKVY 274 9***********77777764444443789***********************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MSAPCFSMHS VIASKVCCRM LFLFPKPRGL PVIVSTEPRV DPSSSSSCPA TPSPSPTDSG 60 SAVGVDGRRT PPEAPVPATF FGLMVWFIPV DPSILSYTAP PAVVASRWTP QSCRTRRLRV 120 GDQAKETDEP HAEPSSEDDE DVNDGKVGEG EGGYVSPFRQ SDMVGKGGKS KPSNRKGRPW 180 VKKGKGKASD DDGDDDAEEK RNFWSVEHII ALIRAKRDQD AHMQGMGHAY ARTKPREWKW 240 QDVAQRLKNV GVHRKAEKCG KNWDNLMQQF KKVYHFQSPS GGQDFFQLTG KERANKGFDF 300 NMDRAVYDKI EGSTGMNHTI NPKNVAGTGS RLHAPPDGFL STRTKLASLF RPHLPPVAIL 360 TNVIQVCPAV DATATAACHG GRRRQTRRRL HPLGAILGAR GRRGRSCLLR RVGIRTTRMT 420 GASRLQRAVD SRDLPTVIVG VGVDDDCARL SCHPPGGQTE RKVDVAISFV AAQ

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MSAPCFSMHS VIASKVCCRM LFLFPKPRGL PVIVSTEPRV DPSSSSSCPA TPSPSPTDSG  60
SAVGVDGRRT PPEAPVPATF FGLMVWFIPV DPSILSYTAP PAVVASRWTP QSCRTRRLRV  120
GDQAKETDEP HAEPSSEDDE DVNDGKVGEG EGGYVSPFRQ SDMVGKGGKS KPSNRKGRPW  180
VKKGKGKASD DDGDDDAEEK RNFWSVEHII ALIRAKRDQD AHMQGMGHAY ARTKPREWKW  240
QDVAQRLKNV GVHRKAEKCG KNWDNLMQQF KKVYHFQSPS GGQDFFQLTG KERANKGFDF  300
NMDRAVYDKI EGSTGMNHTI NPKNVAGTGS RLHAPPDGFL STRTKLASLF RPHLPPVAIL  360
TNVIQVCPAV DATATAACHG GRRRQTRRRL HPLGAILGAR GRRGRSCLLR RVGIRTTRMT  420
GASRLQRAVD SRDLPTVIVG VGVDDDCARL SCHPPGGQTE RKVDVAISFV AAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-09	Trihelix family protein