PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG59021.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 980aa MW: 106465 Da PI: 8.5242

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG59021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.6	2.7e-12	310	384	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + l+L++ +r ++++++r + k+ +We+++k+m+ g+ r++ C +kw+nl + ykki++ ++ GBG59021.1 310 WSTDDQLLLVRCKReqdmhlvGLGHNYGRMRTKEWKWEDIAKRMANVGCPREADDCMKKWDNLFQNYKKIQRFQN 384 8888888999999955555555566667889**************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MADVLRRLPL LVLVVVVFLF VVFLHVCLSC RPWNTRRNRG ASTRRPRTDR PMANMQAGAP 60 QVAGGSASKE GGEFTSLLEA GLDHDDDGEV DLRFGLSSGS AREASRTFII EDQPSPRSLQ 120 RPRGEHTEQS TLRGGASLTA RAGPSSTTRQ SGASTSSVDP LRKTFPARSG VSAAAARISG 180 VAAAPARNSV GRSNTPNPAP TPGDELRGDP ACRPVVRSQP TVENITKGVS NMRAHNDGVD 240 ENGGAGEDVD DGYREDVEAV DDDGDAPIRP LGKVGGRGRG RGRGGGRGRS ARRGSRVADV 300 DDGGKSAAYW STDDQLLLVR CKREQDMHLV GLGHNYGRMR TKEWKWEDIA KRMANVGCPR 360 EADDCMKKWD NLFQNYKKIQ RFQNASGEAD FFRLSNEERR DHNFKFRMER ALYNEIHGGM 420 LGNHTIFHPN IADTGNPDDV QLPRRGAGGG ESVGSEAVGD GWPEERSSPR EFDSNVGSGA 480 RSMKRKNTRQ QALESISTAM IFIHCWGRHT TRTKRSRQDA ISVSGAHLDV DGWGRPNDGE 540 GENETGYPAM EEVARMEHDQ VTPVTTPQGR HREDAGTGTS AATPRVEKAL GERGSGGAAT 600 PCVQQAVGDR GSAGVVGDAA MLGDQAQVCG AAAVVGEAAG TPRETGGGGR KAEEAARTLE 660 IPRAKKRKAA EDDEPLVNRV RKGGVVKELA NRAKLWVDDK LFWTSGKGRR LYNIVNDARE 720 YLVAIAKGVP LPKGPRRVAL PRSNVTVTRL TDSAQLQGAT NRASKCQNVV MRVLHGWVFK 780 SGSRERGYTL AFQYTNRWPR TSRAYIEDRP RDDDMAAYQE ATVKRLIAAF SVAVEIGNAM 840 DGGCISHDRL SRVAESFKVL LTVAMWIMRL AGDDPRSHYE AFYFCNLVAK PVMVASMHRI 900 FDHRRHTLAA ANAATERLGK AQLTLGHAPN FIPDWAKCGV KFGHDASLSG PDEARGLEWL 960 GTGPPTCEDD DDDDDDAEDS

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MADVLRRLPL LVLVVVVFLF VVFLHVCLSC RPWNTRRNRG ASTRRPRTDR PMANMQAGAP  60
QVAGGSASKE GGEFTSLLEA GLDHDDDGEV DLRFGLSSGS AREASRTFII EDQPSPRSLQ  120
RPRGEHTEQS TLRGGASLTA RAGPSSTTRQ SGASTSSVDP LRKTFPARSG VSAAAARISG  180
VAAAPARNSV GRSNTPNPAP TPGDELRGDP ACRPVVRSQP TVENITKGVS NMRAHNDGVD  240
ENGGAGEDVD DGYREDVEAV DDDGDAPIRP LGKVGGRGRG RGRGGGRGRS ARRGSRVADV  300
DDGGKSAAYW STDDQLLLVR CKREQDMHLV GLGHNYGRMR TKEWKWEDIA KRMANVGCPR  360
EADDCMKKWD NLFQNYKKIQ RFQNASGEAD FFRLSNEERR DHNFKFRMER ALYNEIHGGM  420
LGNHTIFHPN IADTGNPDDV QLPRRGAGGG ESVGSEAVGD GWPEERSSPR EFDSNVGSGA  480
RSMKRKNTRQ QALESISTAM IFIHCWGRHT TRTKRSRQDA ISVSGAHLDV DGWGRPNDGE  540
GENETGYPAM EEVARMEHDQ VTPVTTPQGR HREDAGTGTS AATPRVEKAL GERGSGGAAT  600
PCVQQAVGDR GSAGVVGDAA MLGDQAQVCG AAAVVGEAAG TPRETGGGGR KAEEAARTLE  660
IPRAKKRKAA EDDEPLVNRV RKGGVVKELA NRAKLWVDDK LFWTSGKGRR LYNIVNDARE  720
YLVAIAKGVP LPKGPRRVAL PRSNVTVTRL TDSAQLQGAT NRASKCQNVV MRVLHGWVFK  780
SGSRERGYTL AFQYTNRWPR TSRAYIEDRP RDDDMAAYQE ATVKRLIAAF SVAVEIGNAM  840
DGGCISHDRL SRVAESFKVL LTVAMWIMRL AGDDPRSHYE AFYFCNLVAK PVMVASMHRI  900
FDHRRHTLAA ANAATERLGK AQLTLGHAPN FIPDWAKCGV KFGHDASLSG PDEARGLEWL  960
GTGPPTCEDD DDDDDDAEDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	288	RGRGRGGGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-09	Trihelix family protein