PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG58988.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 763aa MW: 81107.8 Da PI: 5.8176

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG58988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.3	1.5e-11	238	313	2	70
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + aLi+a+r+ + +l r k ++ +W +v +++++ g+er++++C +kw+nl +++kk + e+ GBG58988.1 238 WSVDDMVALIRAKRDQDAHLHgmgtayvRMKPREWKWLDVEQRLKKVGVEREAERCGKKWDNLMQQFKKFTGKERL 313 999999******777777744433335689999********************************9888775 PP

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence
MDGRQAVCRS AGGEGGGQRA GQSPSRGSRA VERSENTHLP PHLQPLPDTS DEEEDDRRSR 60 AVPLGSGSTQ EWTATERCGS REPSYGQSYT QLLQQGLSGD EGDGGVNLTF GLCSGRSSTS 120 MRTVLVDNRP DDDGGQVTAV ARPSKSPASS VRQLRVVDDK NDGDAPDVGG NDQDLNDDDC 180 GGGEDNAGQV SPSKQSSMGG KGGRAKASVR NGRRGKKVMG KGSDVEADGD AEGGRYFWSV 240 DDMVALIRAK RDQDAHLHGM GTAYVRMKPR EWKWLDVEQR LKKVGVEREA ERCGKKWDNL 300 MQQFKKFTGK ERLSKGFSFN MDRAVYDKIL GSTSKSHTIN PKNVADTGAP GGVRLPSANS 360 GDPESVGDGD AAVGLDDDDD GSTREVGVAA QGIAQEIASR SPAHDERGAS TAVAARAADV 420 AKAGATTAGG ASQCAEGGRS VGAATVGASH AVEGARAGGG NAGEGSRAGA VAGVGEDDEA 480 LANRVRQRSA REGIDAASKL WVNDIRFWNE TEGNAIVKLM QKARLYLVAE ARGVQPPAIR 540 RSIVLLHTTI PQHKIDDESE FSAAQDRALK VQIIALRLPL WFVGAYIEDR HEDDELAAYQ 600 EASVQRLVGA FTSAVSTAEG VDGGRVSHER LKSVAEAMRV MLAATMWFMR MGSDDRRAHY 660 VAWVFVQLTV KPTLIASMHR SLDARRHIVQ AATAITDKLA KPPITLLAPP LYISDWASIG 720 VKFSHDATLS SPMEAQKLDW LSTGPPQDGD DAIVNDDMSA GGS

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence

MDGRQAVCRS AGGEGGGQRA GQSPSRGSRA VERSENTHLP PHLQPLPDTS DEEEDDRRSR  60
AVPLGSGSTQ EWTATERCGS REPSYGQSYT QLLQQGLSGD EGDGGVNLTF GLCSGRSSTS  120
MRTVLVDNRP DDDGGQVTAV ARPSKSPASS VRQLRVVDDK NDGDAPDVGG NDQDLNDDDC  180
GGGEDNAGQV SPSKQSSMGG KGGRAKASVR NGRRGKKVMG KGSDVEADGD AEGGRYFWSV  240
DDMVALIRAK RDQDAHLHGM GTAYVRMKPR EWKWLDVEQR LKKVGVEREA ERCGKKWDNL  300
MQQFKKFTGK ERLSKGFSFN MDRAVYDKIL GSTSKSHTIN PKNVADTGAP GGVRLPSANS  360
GDPESVGDGD AAVGLDDDDD GSTREVGVAA QGIAQEIASR SPAHDERGAS TAVAARAADV  420
AKAGATTAGG ASQCAEGGRS VGAATVGASH AVEGARAGGG NAGEGSRAGA VAGVGEDDEA  480
LANRVRQRSA REGIDAASKL WVNDIRFWNE TEGNAIVKLM QKARLYLVAE ARGVQPPAIR  540
RSIVLLHTTI PQHKIDDESE FSAAQDRALK VQIIALRLPL WFVGAYIEDR HEDDELAAYQ  600
EASVQRLVGA FTSAVSTAEG VDGGRVSHER LKSVAEAMRV MLAATMWFMR MGSDDRRAHY  660
VAWVFVQLTV KPTLIASMHR SLDARRHIVQ AATAITDKLA KPPITLLAPP LYISDWASIG  720
VKFSHDATLS SPMEAQKLDW LSTGPPQDGD DAIVNDDMSA GGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	7e-08	Trihelix family protein