PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG58949.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-X1

Protein Properties

Length: 2319aa MW: 244812 Da PI: 7.9132

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG58949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.1	1.4e-06	1402	1419	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C + CHeG C++C GBG58949.1 1402 CGRHTCPRVCHEGACGVC 1419 ****************** PP
2	zf-NF-X1	20.2	1.3e-06	1466	1484	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH+GpC+ C+ GBG58949.1 1466 CGNHRCERFCHPGPCGDCR 1484 ******************8 PP
3	zf-NF-X1	19.2	2.7e-06	1529	1546	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CGkH+C+++CH G CppC GBG58949.1 1529 CGKHRCEQTCHNGACPPC 1546 ****************** PP
4	zf-NF-X1	19.2	2.7e-06	1627	1644	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+Cq+lCH+G CppC GBG58949.1 1627 CGRHTCQELCHPGHCPPC 1644 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 2319 aa Download sequence
MPTSMIGLSI SEQSGGGDVA EAARQVCSSP AIRRGGGRGT RSRSDGGGTN SVLSPKPVVQ 60 QVWKEKRPSV DGGCNPGSVG TTGTEAPTPT SSTLTSPLTR GSGSGSGCAD LPLPGVSTFT 120 ATAVAVSATA VPVSRPLDFK LTDGARSEGG EAATGGGGGG GGRCGGAIFS SEASMTKSRE 180 CPNYERSVVS GISSNVVGAR NDGEKSASVS VVTSSGGSIS GKRDSGAPAE RGIAESVAIA 240 GAAAGGGNQG SEAGTADTTS VAAGMVALGG FSDSAVLSRP ASRSAAGAVS GNDAGGLTTD 300 GSQAASAGGM GVSVRAMEDR TQCPSNSASA VGAGKGFNGV GEDKKINGGE GGVTVPVKLS 360 VSVIKDPGGK YAWRARNSPT TPDNRGGGGG GVVGGGVMGE GVRREQDEPA PTPRRLSEVQ 420 SSGGGESEVI PSDRGPILPS PRKADGSDRG VGGGGWNGSG RVVGREEAIP APLFVPQPVP 480 GTSLVQVGNI WNKKTNVRGH RRSVSTSAVD LQVVLPRGPN ERAERHERGG IRRQFPPQPP 540 SLINGGFRDP LAQQQQNVPV GMQQGGVGGA GLNAPAAANG GPAPLNGAMG GGLGENGVNS 600 VSTNVRVQQQ RQQPGANARH VRSATWDGQN SRSGESSGGG SIRRVDPDHT HSEWRRGRNP 660 AEVDGQLMAM DRLEGIGGGG GIPLPLQAHL GTSIPSPLPQ QRGHYRRMSW SQESRHPQHQ 720 QQQLMMGMVP EHRDGHDATM HLRQDKERGM VMPAPEQDRQ SEQRDGSRQS GVVTQLLQQQ 780 QQQQQQTQLA LQQQQLLAHQ KHQQQLTHHH QQQQLAHQQQ QQLAHQQQQQ LAHQQQHQPQ 840 QWYGNSSGYG GREVGEKMGR TEDRGDDSGW EGHHQNLQAA GDDGLTGGGR AHAPSPALRG 900 REGGDAMGNR VSGGSMGGAD VVNNVERIHR RSRSSGGFAV EEQQMGVETG EAGTPSSKSR 960 SEYERMKRET GDRSRDGSGY DGPQDEDEKG SGDRINGRNK EKVKEGEAEV ERYQQQLQQV 1020 PPWVTRGGAP SVAAASAGAG RGNSTVQTRR GRARSDSFDW GGARHRSDMS SNWRSGGPRD 1080 GEESAGHHQF FHGDEKDWSS ERERVRDRGE ERLDRDEWLA MERVERRERE DPQIPRRVER 1140 EDKQQRWVGM GENSDRERDP PPPPPERRSG GGSIRRKEPS SLSAIPPVSP VVGGPVGASP 1200 RPSRLMFGRA VPQLVQELEE KLMKGQVECM ICCEIVGRSS SVWSCSSCYA IFHLSCTRKW 1260 ARVPVATASD LSAAGGQQQP GGSGEGTWRC PGCQTPQSIR ASELRYRCFC GQREDPPNDP 1320 YLTPHSCGDA CRKPLARPTS DGGYRCPHVC TMRCHPGPHA PCAAMAPTVF CYCRKSEITR 1380 KCADYEKHGR SCGSTCMRSL ACGRHTCPRV CHEGACGVCE VTVKTRCFCG KKEELQSCGR 1440 IEFKGEFPTS GGVFSCMERC SKILGCGNHR CERFCHPGPC GDCRLLPSLL LRCPCGKEEI 1500 KNLLGGMDRK GCLDPVPTCE GVCEKLLACG KHRCEQTCHN GACPPCEVPM EQKCRCVLAV 1560 RIVPCFQLDV GTVFTCDRKC GKLKNCRRHR CSAVCCAAPP VDSPGPTAPV PGDSHFCMIV 1620 CGKKLRCGRH TCQELCHPGH CPPCMDSVMT ELECACGRTS IPPPVPCGTP LPACPFPCSV 1680 PQPCGHPSTH LCHFGDCPPC TVAVAKECVG GHVVLRGVPC GSKDIRCNAV CGKLRRCGIH 1740 TCTRTCHRPP CDAVEIEGEG DHTSPGSRDG FSISRSSRRL PCGQTCGQPR RDCEHFCKAV 1800 CHPGEACPNS RCTAVVAIVC LCGRLKAQVQ CCAGGGDDDD GFDEAAFVSQ LGLKLQPVQQ 1860 SADGASPGYV PLGRRKIACD DECAKCEKKR ILANAFGVSM APGLEGEEGT AGGTESGAML 1920 MEMIRRDPIW VSAVELRLQF LLLGSRNALK MSTASATSGM RVHVFRYLPK ERRAAIHELA 1980 ARWLMESISV GWEPKRFIVV YTTAKSRAPL RGLISKPGSS VPAVGHAVAP LPNGEVDMDP 2040 RCVISFFDLP RDADISAGIL RFAGDCELVW LNDRNALSVF SNPIRATTAL RYLDHASAYW 2100 GAIAQQSQPS QSSSAGASTG MRVWGKGPSV QASSSSSSGQ PAHGSLAMRR NRSGSGASAA 2160 WHADAWSENE TQADLEGISG GSRADPLTQV WKQEQSGLAQ SNFWSALAEE GDGDATEENG 2220 EGSTAATPRT EGGDGQRGSH SRSDSGESSK KGASGLNAAG TVPSSPSGGG SPLSTSSVII 2280 RNVGDDNKWG AGGLALAGLG DGCGKGDDEE DWESVLDDH

Sequence ? help Back to Top

Protein Sequence Length: 2319 aa Download sequence

MPTSMIGLSI SEQSGGGDVA EAARQVCSSP AIRRGGGRGT RSRSDGGGTN SVLSPKPVVQ  60
QVWKEKRPSV DGGCNPGSVG TTGTEAPTPT SSTLTSPLTR GSGSGSGCAD LPLPGVSTFT  120
ATAVAVSATA VPVSRPLDFK LTDGARSEGG EAATGGGGGG GGRCGGAIFS SEASMTKSRE  180
CPNYERSVVS GISSNVVGAR NDGEKSASVS VVTSSGGSIS GKRDSGAPAE RGIAESVAIA  240
GAAAGGGNQG SEAGTADTTS VAAGMVALGG FSDSAVLSRP ASRSAAGAVS GNDAGGLTTD  300
GSQAASAGGM GVSVRAMEDR TQCPSNSASA VGAGKGFNGV GEDKKINGGE GGVTVPVKLS  360
VSVIKDPGGK YAWRARNSPT TPDNRGGGGG GVVGGGVMGE GVRREQDEPA PTPRRLSEVQ  420
SSGGGESEVI PSDRGPILPS PRKADGSDRG VGGGGWNGSG RVVGREEAIP APLFVPQPVP  480
GTSLVQVGNI WNKKTNVRGH RRSVSTSAVD LQVVLPRGPN ERAERHERGG IRRQFPPQPP  540
SLINGGFRDP LAQQQQNVPV GMQQGGVGGA GLNAPAAANG GPAPLNGAMG GGLGENGVNS  600
VSTNVRVQQQ RQQPGANARH VRSATWDGQN SRSGESSGGG SIRRVDPDHT HSEWRRGRNP  660
AEVDGQLMAM DRLEGIGGGG GIPLPLQAHL GTSIPSPLPQ QRGHYRRMSW SQESRHPQHQ  720
QQQLMMGMVP EHRDGHDATM HLRQDKERGM VMPAPEQDRQ SEQRDGSRQS GVVTQLLQQQ  780
QQQQQQTQLA LQQQQLLAHQ KHQQQLTHHH QQQQLAHQQQ QQLAHQQQQQ LAHQQQHQPQ  840
QWYGNSSGYG GREVGEKMGR TEDRGDDSGW EGHHQNLQAA GDDGLTGGGR AHAPSPALRG  900
REGGDAMGNR VSGGSMGGAD VVNNVERIHR RSRSSGGFAV EEQQMGVETG EAGTPSSKSR  960
SEYERMKRET GDRSRDGSGY DGPQDEDEKG SGDRINGRNK EKVKEGEAEV ERYQQQLQQV  1020
PPWVTRGGAP SVAAASAGAG RGNSTVQTRR GRARSDSFDW GGARHRSDMS SNWRSGGPRD  1080
GEESAGHHQF FHGDEKDWSS ERERVRDRGE ERLDRDEWLA MERVERRERE DPQIPRRVER  1140
EDKQQRWVGM GENSDRERDP PPPPPERRSG GGSIRRKEPS SLSAIPPVSP VVGGPVGASP  1200
RPSRLMFGRA VPQLVQELEE KLMKGQVECM ICCEIVGRSS SVWSCSSCYA IFHLSCTRKW  1260
ARVPVATASD LSAAGGQQQP GGSGEGTWRC PGCQTPQSIR ASELRYRCFC GQREDPPNDP  1320
YLTPHSCGDA CRKPLARPTS DGGYRCPHVC TMRCHPGPHA PCAAMAPTVF CYCRKSEITR  1380
KCADYEKHGR SCGSTCMRSL ACGRHTCPRV CHEGACGVCE VTVKTRCFCG KKEELQSCGR  1440
IEFKGEFPTS GGVFSCMERC SKILGCGNHR CERFCHPGPC GDCRLLPSLL LRCPCGKEEI  1500
KNLLGGMDRK GCLDPVPTCE GVCEKLLACG KHRCEQTCHN GACPPCEVPM EQKCRCVLAV  1560
RIVPCFQLDV GTVFTCDRKC GKLKNCRRHR CSAVCCAAPP VDSPGPTAPV PGDSHFCMIV  1620
CGKKLRCGRH TCQELCHPGH CPPCMDSVMT ELECACGRTS IPPPVPCGTP LPACPFPCSV  1680
PQPCGHPSTH LCHFGDCPPC TVAVAKECVG GHVVLRGVPC GSKDIRCNAV CGKLRRCGIH  1740
TCTRTCHRPP CDAVEIEGEG DHTSPGSRDG FSISRSSRRL PCGQTCGQPR RDCEHFCKAV  1800
CHPGEACPNS RCTAVVAIVC LCGRLKAQVQ CCAGGGDDDD GFDEAAFVSQ LGLKLQPVQQ  1860
SADGASPGYV PLGRRKIACD DECAKCEKKR ILANAFGVSM APGLEGEEGT AGGTESGAML  1920
MEMIRRDPIW VSAVELRLQF LLLGSRNALK MSTASATSGM RVHVFRYLPK ERRAAIHELA  1980
ARWLMESISV GWEPKRFIVV YTTAKSRAPL RGLISKPGSS VPAVGHAVAP LPNGEVDMDP  2040
RCVISFFDLP RDADISAGIL RFAGDCELVW LNDRNALSVF SNPIRATTAL RYLDHASAYW  2100
GAIAQQSQPS QSSSAGASTG MRVWGKGPSV QASSSSSSGQ PAHGSLAMRR NRSGSGASAA  2160
WHADAWSENE TQADLEGISG GSRADPLTQV WKQEQSGLAQ SNFWSALAEE GDGDATEENG  2220
EGSTAATPRT EGGDGQRGSH SRSDSGESSK KGASGLNAAG TVPSSPSGGG SPLSTSSVII  2280
RNVGDDNKWG AGGLALAGLG DGCGKGDDEE DWESVLDDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein