PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY68150.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 272aa MW: 31596.2 Da PI: 9.6061

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY68150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.8e-07	100	119	3	22
S---SGGGGTS--TTTTT-S CS zf-CCCH 3 telCrffartGtCkyGdrCk 22 + C+f+++tG C++G rC+ GAY68150.1 100 KAYCPFHLKTGACRFGQRCS 119 578****************6 PP
2	zf-CCCH	22.2	2.5e-07	201	227	1	25
--S---SGGGGTS..--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaH 25 +k ++C ++++ tC++G C+F+H GAY68150.1 201 WKIAICGEYMKSRlkTCSRGMACNFIH 227 7889*********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MAGRSYDMFS EHREFRGEKR MNVIRMMIEN MLKKGLQKLY GKEMRLLSGR KRVPKKDANP 60 LSKKEDVDRP TSNPLPPQSE AFADHQNAQQ ALETVAQQDK AYCPFHLKTG ACRFGQRCSI 120 VHFYPDKSCT LLIKNMYNGL GLAWEQDERL EVCRNGSSHL RGNVYVHYKS LESAVLAYHS 180 VNGRYFTGKQ ITCEFINVTR WKIAICGEYM KSRLKTCSRG MACNFIHYFR NPSGDYEWAD 240 WDKPPPRYWV KKMAALFGYS DESGTWNQER LG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-115	C3H family protein