PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY68149.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 290aa    MW: 33781.5 Da    PI: 9.8517
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY68149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-07100119322
                 S---SGGGGTS--TTTTT-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCk 22 
                  + C+f+++tG C++G rC+
  GAY68149.1 100 KAYCPFHLKTGACRFGQRCS 119
                 578****************6 PP
2zf-CCCH22.12.8e-07201227125
                 --S---SGGGGTS..--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaH 25 
                 +k ++C  ++++   tC++G  C+F+H
  GAY68149.1 201 WKIAICGEYMKSRlkTCSRGMACNFIH 227
                 7889*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MAGRSYDMFS EHREFRGEKR MNVIRMMIEN MLKKGLQKLY GKEMRLLSGR KRVPKKDANP  60
LSKKEDVDRP TSNPLPPQSE AFADHQNAQQ ALETVAQQDK AYCPFHLKTG ACRFGQRCSI  120
VHFYPDKSCT LLIKNMYNGL GLAWEQDERL EVCRNGSSHL RGNVYVHYKS LESAVLAYHS  180
VNGRYFTGKQ ITCEFINVTR WKIAICGEYM KSRLKTCSRG MACNFIHYFR NPSGDYEWAD  240
WDKPPPRYWV KKMAALFDST NADRHHYRRS RSRETDIVKS GSGRSHDDER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-112C3H family protein