PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY67264.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 449aa MW: 50576 Da PI: 9.2818

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY67264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.3e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H GAY67264.1 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	16	3.3e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ GAY67264.1 134 WVCEKCSKGYAVQSDYKAHLKTC 156 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MLANNSPSAI PCSSEPFSCL ENGISHNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPSCLHHDP CHALGDLVGI 120 KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD 180 ACSKGHIRSE QQGLQQQPAA CLSRTASSPS PSSDTNFSAS HWPNLMVPKV PTIDTMFLNR 240 IHQGDKSTRN VKHHNLELQL LTTSNPIDVS DDSPKRDHDH NHSTQLQLSI GSSDISEKNE 300 SNVTYLSSTT NGKPAMDIAS RLKEQAREQL RLAMAEKACA EEARQAAKRQ IELAEQEFAN 360 AKRIRQQAQA ELDKAQALKE HAIKQINSTI LRVTCHACKQ QFQSRLPPDE NSLVLSYMSS 420 ATTEGEVNNR NNRTNHRLAK TVNLSNKSL

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MLANNSPSAI PCSSEPFSCL ENGISHNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPSCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACSKGHIRSE QQGLQQQPAA CLSRTASSPS PSSDTNFSAS HWPNLMVPKV PTIDTMFLNR  240
IHQGDKSTRN VKHHNLELQL LTTSNPIDVS DDSPKRDHDH NHSTQLQLSI GSSDISEKNE  300
SNVTYLSSTT NGKPAMDIAS RLKEQAREQL RLAMAEKACA EEARQAAKRQ IELAEQEFAN  360
AKRIRQQAQA ELDKAQALKE HAIKQINSTI LRVTCHACKQ QFQSRLPPDE NSLVLSYMSS  420
ATTEGEVNNR NNRTNHRLAK TVNLSNKSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-137	C2H2 family protein