PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY66792.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 334aa MW: 36355.9 Da PI: 7.063

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY66792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.4	1.8e-36	22	138	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec.....eaesssssasnsss 87 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ ++++ + + +ss+ + +++s+ GAY66792.1 22 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwqpstsNNNA---AteaepNMGSSEMAIQEQSE 117 79**************************************************************988864432222...22234444455555555555 PP TCP 88 gkaaksaakskksqksaasal 108 ++ +++ +++ +++a++ + GAY66792.1 118 SSGYSFQIHRQLGDHNANNDS 138 544444445555555544444 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MGMKGTEGEI VQVEGGHIVR STGRKDRHSK VYTSKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKSSID KLAELPPWQP STSNNNAATE AEPNMGSSEM AIQEQSESSG 120 YSFQIHRQLG DHNANNDSTF MSPPPLDTDA IADTIKSFFP TSTTASAINF QNYPAGILTR 180 SANPTEDLGL SLHTAFQDPG LIHGQSRGDT SHTTSADQTP FAGSAPVGFD SSFQRMLAWN 240 NETSAETRGT GGFLFNSSSL SQQAALAFRG PLQSSFTQSV RAWDDIPVGK THEIQQSSVF 300 GMPAGFNIPA RIHGQDHHQH SNRPSSSSPN NSHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	7e-74	TCP family protein