PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY66316.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 331aa MW: 37224.9 Da PI: 5.8192

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY66316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.4	3.2e-07	127	148	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H GAY66316.1 127 FCDICGKGFKRDANLRMHMRAH 148 6*******************99 PP
2	zf-C2H2	12.1	0.0006	211	234	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C +C+ ksFs s+L++H +++ GAY66316.1 211 YSCDKCHkKSFSVVSDLRSHYKNC 234 99*******************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MSNLDESRPI RPEYPVQYTD PRIPLTNLSA VRTRMESLQQ FLLESINSNA LISQHQMNMV 60 SSEIASAIHQ VIVNGSALLA CSPQQPTLQQ LPPDPKNPET GSEHDIESDC EIVEIDAVEL 120 LAEHIHFCDI CGKGFKRDAN LRMHMRAHGD EFKTPQALAK PEKGSVSGRK TRFSCPYDGC 180 NRNKKHKKFR ALKSVICVKN HFKRSHCPKM YSCDKCHKKS FSVVSDLRSH YKNCGESRWK 240 CSCGTSFSRK DKLFGHVALF EGHMPEVEVD EKMKHHDQDV VVVGDDDDDD EMVDDIDDDG 300 LSSFEGLLDL DGFGSFDDFC LQDVLGDGGF S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-77	C2H2 family protein