PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY66174.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 724aa MW: 79818 Da PI: 4.3542

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY66174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.8	4.4e-12	577	619	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW+++E el+++a++q+G++ + I + ++ gRt+ q+k+++ k GAY66174.1 577 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKK 619 69*****************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MDLDADLFAD ESGPAVNHVR GRFQPKAKPR PRNERTASVD VIDKDSQLLD PIVSSVPASE 60 VVRTVEQFKE NESSENALHS EVTASDGCGD LLSSFQKAAG QNADVLSGLE SLNDFESQSS 120 NGTEMPALIV SDYNGGEAVV FEGLSSDNNA APGVCDAAQA ETSADMFLTQ DPISCGQAAL 180 TNNAGGIPVD DARLEREVQQ DGAFPDLNCL DSTSEEAVAS GQRAAKYKPR PQVRTESEKF 240 NISSVPHPDA VESVMHSPNA QFVSSGSQFM SEGSIPASVP EDCFDYSSID LGGTTPPDPT 300 SSEFPVNEEL TNFAETSFTD AAASGDMQHE DFPATTESQS AMGKETKAST VLSLSQRLIE 360 SSQAGKETEV GKLLRQLRKG VVVPELVDEP DNEARNDGSF SAEPPSNAVD EDEGDVGGNS 420 AEKTSEKKRA PRKSKETVSE NGKTVRKRKK ANEASDTDKN PPKKFSHSTR RKRRIVNKEL 480 LQTPEDEIDP QKVPMKDLIL LAEYKERLAS KEAKATGTPL KNQSAEHSSR EEDYHNEDET 540 FASEQDNGSF GDPATDRVQP RVHFFNYQSF MKKTPTVRWS KQETELFYEA IRQFGTDLSM 600 IQQLFPGRTR QQVKLKYKKE EREHPLRLTE ALTNRAKDHS HFEKVIEQLQ QFAAQAAQDA 660 KEDDSASMID EDLEELNPQY NDKAEKVEQD QNAEADVNEV HSPMKDDENA DDYDDIWNSY 720 KSEF

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MDLDADLFAD ESGPAVNHVR GRFQPKAKPR PRNERTASVD VIDKDSQLLD PIVSSVPASE  60
VVRTVEQFKE NESSENALHS EVTASDGCGD LLSSFQKAAG QNADVLSGLE SLNDFESQSS  120
NGTEMPALIV SDYNGGEAVV FEGLSSDNNA APGVCDAAQA ETSADMFLTQ DPISCGQAAL  180
TNNAGGIPVD DARLEREVQQ DGAFPDLNCL DSTSEEAVAS GQRAAKYKPR PQVRTESEKF  240
NISSVPHPDA VESVMHSPNA QFVSSGSQFM SEGSIPASVP EDCFDYSSID LGGTTPPDPT  300
SSEFPVNEEL TNFAETSFTD AAASGDMQHE DFPATTESQS AMGKETKAST VLSLSQRLIE  360
SSQAGKETEV GKLLRQLRKG VVVPELVDEP DNEARNDGSF SAEPPSNAVD EDEGDVGGNS  420
AEKTSEKKRA PRKSKETVSE NGKTVRKRKK ANEASDTDKN PPKKFSHSTR RKRRIVNKEL  480
LQTPEDEIDP QKVPMKDLIL LAEYKERLAS KEAKATGTPL KNQSAEHSSR EEDYHNEDET  540
FASEQDNGSF GDPATDRVQP RVHFFNYQSF MKKTPTVRWS KQETELFYEA IRQFGTDLSM  600
IQQLFPGRTR QQVKLKYKKE EREHPLRLTE ALTNRAKDHS HFEKVIEQLQ QFAAQAAQDA  660
KEDDSASMID EDLEELNPQY NDKAEKVEQD QNAEADVNEV HSPMKDDENA DDYDDIWNSY  720
KSEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	449	KKRAPRKSKETVSENGKTVRKRK
2	443	449	KTVRKRK
3	446	450	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-52	MYB_related family protein