PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY64971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25358 Da PI: 9.7385 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.6 | 3.3e-41 | 46 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll+++p+++r da++slv+eA+ r+rdPvyG++g i++lqqq+++l+ael+++++ GAY64971.1 46 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLSEVPDSQRADAANSLVFEANLRLRDPVYGCLGAISSLQQQVQSLQAELNAMRT 144 7**********************************************************************************************9987 PP DUF260 100 e 100 e GAY64971.1 145 E 145 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MSRDRERFDE IGKRIKRESD VLNSQMGRRQ MLNPNSSAGT LNTVTPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPQKFAAVHK VFGASNVSKL LSEVPDSQRA DAANSLVFEA NLRLRDPVYG 120 CLGAISSLQQ QVQSLQAELN AMRTEIMKYK YREAATASTI ISSSNPLFSS GVVSIAGGSS 180 APSLSTSQPP PHPPPPPPPS IVISSSSSSS VSSLYTPPMR TTDFVKALLV LMLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-76 | LBD family protein |